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The Top 23 Format Vcf Open Source Projects

Open source projects categorized as Format Vcf
Categories > Science > Vcf
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16most recent commit 5 months ago
Node Vcf ⭐ 95
A not so forgiving vCard / vcf parser
dependent packages 16total releases 20most recent commit 4 months agonpm vcf} Downloads
Hadoop Bam ⭐ 66
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
dependent packages 33total releases 17most recent commit 5 years ago
Pyvcf ⭐ 58
A Variant Call Format reader for Python.
most recent commit 9 years ago
Gwasvcf ⭐ 36
Reading, querying and writing GWAS summary data in VCF format
most recent commit 8 months ago
Hapbin ⭐ 27
Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
most recent commit 5 years ago
Biotoolbox ⭐ 27
Tools for querying and analysis of genomic data
most recent commit 7 months ago
Seqbreed ⭐ 25
A python tool to evaluate genomic prediction in complex scenarios
most recent commit 2 years ago
Ivc ⭐ 17
Integrated Variant Caller
total releases 28most recent commit 6 years ago
Dnacol ⭐ 16
Color DNA/RNA bases in terminal output
total releases 3most recent commit 7 years ago
Anno ⭐ 15
Anno is a variant annotation tool
most recent commit 8 years ago
Ucscbeacon ⭐ 10
A GA4GH Draft Beacon implementation
most recent commit 9 years ago
Vcf2sfs ⭐ 9
R functions for generating site frequency spectra (SFS) from a VCF file.
most recent commit 4 years ago
Gwas Vcf Specification ⭐ 9
Specification for the GWAS-VCF format (manuscript in preparation)
most recent commit 3 years ago
File_conversions ⭐ 9
Scripts to convert between file formats for various analyses
most recent commit 3 months ago
Vcf Conversion Tools ⭐ 8
Tools to convert to and from vcf format
most recent commit 7 years ago
Vcf2maf ⭐ 8
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
most recent commit 8 years ago
Vapor ⭐ 7
Tool for the validation of structural genomic rearrangements using long read sequence data
most recent commit 2 years ago
Admixfrog ⭐ 7
most recent commit a year ago
Ttplot ⭐ 6
Tao Yan's Plot Toolkit
most recent commit 5 years ago
Dosageconvertor ⭐ 6
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4 to other formats such as MaCH or PLINK.
most recent commit 5 years ago
Tomatula ⭐ 6
most recent commit 6 years ago
Cflib ⭐ 6
A library to create and handle counts files used with PoMo.
total releases 6most recent commit 3 months ago
The 3 Most Depended On Format Vcf Open Source Projects
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Node Vcf ⭐ 95
A not so forgiving vCard / vcf parser
dependent packages 16total releases 20latest release February 02, 2022most recent commit 4 months agonpm vcf} Downloads
The 6 Latest Releases In Format Vcf Open Source Projects
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Node Vcf ⭐ 95
A not so forgiving vCard / vcf parser
dependent packages 16total releases 20latest release February 02, 2022most recent commit 4 months agonpm vcf} Downloads
Cflib ⭐ 6
A library to create and handle counts files used with PoMo.
total releases 6latest release February 11, 2021most recent commit 3 months ago
Ivc ⭐ 17
Integrated Variant Caller
total releases 28latest release March 15, 2018most recent commit 6 years ago
Dnacol ⭐ 16
Color DNA/RNA bases in terminal output
total releases 3latest release August 30, 2017most recent commit 7 years ago
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