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The Top 23 Fluorescence Open Source Projects

Open source projects categorized as Fluorescence
Categories > Fluorescence
Qudi ⭐ 150
A modular laboratory experiment management suite.
most recent commit 9 months ago
Cytoflow ⭐ 144
A Python toolbox for quantitative, reproducible flow cytometry analysis
total releases 21most recent commit a year ago
Land ⭐ 82
Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)
most recent commit a year ago
Fpbase ⭐ 58
The Fluorescent Protein Database
most recent commit 3 months ago
Cytoself ⭐ 58
Self-supervised models for encoding protein localization patterns from microscopy images
total releases 6most recent commit 5 months ago
Imswitch ⭐ 57
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
most recent commit 7 months ago
Phenobottle ⭐ 45
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
most recent commit 8 months ago
Cyclops ⭐ 38
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
most recent commit 10 months ago
Open Jip ⭐ 21
An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.
most recent commit 7 months ago
Flika ⭐ 20
An interactive image processing program for biologists written in Python.
most recent commit 6 months ago
Tttrlib ⭐ 15
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy - For active develeopment visit gitlab.peulen.xyz
total releases 2most recent commit 3 months ago
Eemr ⭐ 14
Utilities for pre-processing emission-excitation-matrix (EEM).
dependent packages 2total releases 7most recent commit 3 years ago
Fretbursts ⭐ 14
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
most recent commit 5 years ago
Assaytools ⭐ 14
Modeling and Bayesian analysis of fluorescence and absorbance assays.
most recent commit 3 years ago
Smo ⭐ 11
Robust and unbiased estimation of the background distribution for fluorescence microscopy.
total releases 5most recent commit 8 months ago
Fretbursts ⭐ 9
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
total releases 23most recent commit 3 years ago
Flopr ⭐ 7
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
most recent commit 4 months ago
Mash Fret ⭐ 7
MATLAB package to analyze single-molecule FRET data
most recent commit 3 months ago
Chisurf ⭐ 7
Global analysis platform for fluorescence data
most recent commit 3 years ago
Labellib ⭐ 6
Library for coarse-grained simulations of probes flexibly coupled to biomolecules.
total releases 15most recent commit 3 years ago
Optimap ⭐ 6
An open-source python library for the processing of fluorescence video data
most recent commit 4 months ago
Flowcatchr ⭐ 5
A framework for tracking and analyzing flowing blood cells in time lapse microscopy images
most recent commit 6 months ago
Lucyd Deconvolution ⭐ 5
A Feature-Driven Richardson-Lucy Deconvolution Network
most recent commit 7 months ago
The 7 Latest Releases In Fluorescence Open Source Projects
Cytoself ⭐ 58
Self-supervised models for encoding protein localization patterns from microscopy images
total releases 6latest release September 29, 2022most recent commit 5 months ago
Fretbursts ⭐ 9
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
total releases 23latest release September 20, 2022most recent commit 3 years ago
Cytoflow ⭐ 144
A Python toolbox for quantitative, reproducible flow cytometry analysis
total releases 21latest release January 18, 2022most recent commit a year ago
Smo ⭐ 11
Robust and unbiased estimation of the background distribution for fluorescence microscopy.
total releases 5latest release November 09, 2021most recent commit 8 months ago
Labellib ⭐ 6
Library for coarse-grained simulations of probes flexibly coupled to biomolecules.
total releases 15latest release October 31, 2020most recent commit 3 years ago
Eemr ⭐ 14
Utilities for pre-processing emission-excitation-matrix (EEM).
dependent packages 2total releases 7latest release June 26, 2019most recent commit 3 years ago
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