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The Top 15 Python Fastq Ngs Open Source Projects

Open source projects categorized as Python Fastq Ngs
Categories > Fastq
Categories > Science > Ngs
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Ngscheckmate ⭐ 106
Software program for checking sample matching for NGS data
most recent commit 8 months ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Fastq And Furious ⭐ 49
Efficient handling of FASTQ files from Python
total releases 6most recent commit a year ago
Cfdnapattern ⭐ 42
Pattern Recognition for Cell-free DNA
most recent commit 6 years ago
Ngs_pipeline ⭐ 31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 6 years ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9most recent commit 7 months ago
Cris.py ⭐ 24
Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.
most recent commit 9 months ago
Seqqscorer ⭐ 18
most recent commit a year ago
Pythonngstools ⭐ 9
Scripts for NGS processing
most recent commit 7 years ago
Fastqwiper ⭐ 9
An ensamble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and fix reads interleaving.
total releases 27most recent commit 6 months ago
Etl Scripts ⭐ 5
ETL scripts written in Jython 2.7 for openBIS dropboxes.
most recent commit 5 months ago
The 3 Latest Releases In Python Fastq Ngs Open Source Projects
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9latest release November 13, 2021most recent commit 7 months ago
Fastq And Furious ⭐ 49
Efficient handling of FASTQ files from Python
total releases 6latest release August 15, 2021most recent commit a year ago
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