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The Top 23 Fastq Ngs Open Source Projects

Open source projects categorized as Fastq Ngs
Categories > Fastq
Categories > Science > Ngs
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
Ngs Bits ⭐ 121
Short-read sequencing tools
most recent commit 3 months ago
Ngscheckmate ⭐ 106
Software program for checking sample matching for NGS data
most recent commit 8 months ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Fastq And Furious ⭐ 49
Efficient handling of FASTQ files from Python
total releases 6most recent commit a year ago
Cfdnapattern ⭐ 42
Pattern Recognition for Cell-free DNA
most recent commit 6 years ago
Fastq Screen ⭐ 42
Detecting contamination in NGS data and multi-species analysis
most recent commit a year ago
Ngs_pipeline ⭐ 31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 6 years ago
Fastq_utils ⭐ 29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
most recent commit a year ago
Faster ⭐ 28
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
most recent commit 3 months ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9most recent commit 7 months ago
Cris.py ⭐ 24
Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.
most recent commit 9 months ago
Fusiondirect.jl ⭐ 23
(No maintenance) Detect gene fusion directly from raw fastq files
most recent commit 7 years ago
The 5 Latest Releases In Fastq Ngs Open Source Projects
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9latest release November 13, 2021most recent commit 7 months ago
Fastq And Furious ⭐ 49
Efficient handling of FASTQ files from Python
total releases 6latest release August 15, 2021most recent commit a year ago
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