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The Top 23 Fasta Open Source Projects

Open source projects categorized as Fasta
Categories > Fasta
Plasclass ⭐ 23
A tool to classify sequences of plasmid or chromosomal origin. A paper describing this tool is available at: https://journals.plos.org/ploscompbiol/article?id=
total releases 1most recent commit 10 months ago
Deeph3 Distances Orientations ⭐ 23
most recent commit 3 years ago
Mic_prediction ⭐ 22
Code for doing MIC predictions on genomes
most recent commit 4 years ago
Smbl ⭐ 22
SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
total releases 48most recent commit 7 years ago
Transfuse ⭐ 22
Merge transcriptome assemblies
total releases 9most recent commit 8 years ago
Tidehunter ⭐ 22
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
most recent commit 6 months ago
Skewit ⭐ 22
GC Skew Test for Bacterial Genomes
most recent commit 2 years ago
Upimapi ⭐ 22
UniProt Id Mapping through API
most recent commit 4 months ago
Pseudogenepipeline ⭐ 22
most recent commit a year ago
Swiftortho ⭐ 21
A high performance tool to identify orthologs and paralogs across genomes.
most recent commit a year ago
Taxonomer_0.5 ⭐ 21
full taxonomer cython repository
most recent commit 4 years ago
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19most recent commit 3 years ago
Contiguator ⭐ 20
Bacterial genomes finishing tool for structural insights on draft genomes
most recent commit 8 months ago
Amber ⭐ 20
AMBER: Assessment of Metagenome BinnERs
total releases 10most recent commit a year ago
Assembler Components ⭐ 20
Components of genome sequence assembly tools
most recent commit 2 years ago
Ust ⭐ 20
most recent commit 4 years ago
Bwbble ⭐ 20
Read alignment with a multi-genome reference
most recent commit 4 years ago
Pymlst ⭐ 20
whole genome MLST analysis
total releases 5most recent commit 4 months ago
Shortbred ⭐ 19
ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.
most recent commit a year ago
Deepdist ⭐ 19
Deep learning prediction of protein residue-residue distances
most recent commit 2 years ago
Opal ⭐ 19
Metagenomic binning using low-density hashing a support vector machine
most recent commit 4 years ago
Kollector ⭐ 19
de novo targeted gene assembly
most recent commit 4 years ago
Npscarf ⭐ 19
most recent commit 5 years ago
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