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The Top 23 Fasta Open Source Projects

Open source projects categorized as Fasta
Categories > Fasta
Fastahack ⭐ 54
utilities for indexing and sequence extraction from FASTA files
most recent commit 4 years ago
Dnaio ⭐ 52
Efficiently read and write sequencing data from Python
dependent packages 15total releases 23most recent commit 3 months agopypi dnaio} Downloads
Yamp ⭐ 52
YAMP: Yet Another Metagenomic Pipeline
most recent commit a year ago
Catfasta2phyml ⭐ 52
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
most recent commit a year ago
Cryfa ⭐ 51
A secure encryption tool for genomic data
most recent commit 2 years ago
Gccontent Benchmark ⭐ 49
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
most recent commit a year ago
Rufus ⭐ 49
RUFUS k-mer based genomic variant detection
most recent commit 9 months ago
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
Fastx.jl ⭐ 48
Parse and process FASTA and FASTQ formatted files of biological sequences.
most recent commit 6 months ago
Macrel ⭐ 48
Predict AMPs in (meta)genomes and peptides
most recent commit 4 months ago
Gto ⭐ 47
A genomics-proteomics toolkit
most recent commit 6 months ago
Isescan ⭐ 47
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
most recent commit 2 years ago
Sequence_manipulation_suite ⭐ 45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
most recent commit 7 months ago
Yamda ⭐ 45
Yet Another Motif Discovery Algorithm
most recent commit 5 years ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Prothint ⭐ 45
Protein hint generation pipeline for gene finding in eukaryotic genomes
most recent commit 6 months ago
Ectools ⭐ 44
tools for error correction and working with long read data
most recent commit 9 years ago
Fluentdna ⭐ 43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
total releases 3most recent commit 3 years ago
Virtect ⭐ 43
Detection of viruses from RNA-Seq on human samples
most recent commit a year ago
Sports1.1 ⭐ 42
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
most recent commit 9 months ago
Svmu ⭐ 42
A program to call variants from genome alignment
most recent commit 4 years ago
Cmash ⭐ 42
Fast and accurate set similarity estimation via containment min hash
total releases 7most recent commit 4 months ago
Reindeer ⭐ 42
REINDEER REad Index for abuNDancE quERy
most recent commit 2 years ago
The 3 Latest Releases In Fasta Open Source Projects
Bioruby Faster ⭐ 9
A fast and simple parser for Fasta / FastQ files
dependent packages 1total releases 7latest release June 13, 2012most recent commit 12 years agorubygems bio-faster} Downloads
Fastinterval ⭐ 11
Simple interval class for fast fasta access
total releases 3latest release June 12, 2012most recent commit 12 years ago
Fastareader ⭐ 7
read single/multi FASTA
dependent packages 6total releases 8latest release February 24, 2012most recent commit 10 years agonpm fastareader} Downloads
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