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The Top 19 Fasta Ngs Open Source Projects

Open source projects categorized as Fasta Ngs
Categories > Fasta
Categories > Science > Ngs
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Isoquant ⭐ 98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
most recent commit 4 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 4 months ago
Haplogrep Cmd ⭐ 64
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
most recent commit a year ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Consent ⭐ 40
Scalable long read self-correction and assembly polishing with multiple sequence alignment
most recent commit 3 years ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Vapid ⭐ 27
VAPiD: Viral Annotation and Identification Pipeline
most recent commit 3 years ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9most recent commit 7 months ago
Bio Viennangs ⭐ 23
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
most recent commit 5 years ago
Fusiondirect.jl ⭐ 23
(No maintenance) Detect gene fusion directly from raw fastq files
most recent commit 7 years ago
Nanovar Archived ⭐ 17
Archived version 1.0.2
most recent commit 4 years ago
Lava ⭐ 13
LAVA: Lightweight Assignment of Variant Alleles
most recent commit 6 years ago
Angsd Wrapper ⭐ 13
Utilities for analyzing next generation sequencing data.
most recent commit 4 years ago
Mix ⭐ 11
MIX: Combining multiple assemblies from NGS data
most recent commit 8 years ago
Satminer ⭐ 5
satMiner: A Toolkit to NGS satellite DNA mining and analysis
most recent commit 2 years ago
The 2 Latest Releases In Fasta Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Demultiplex ⭐ 26
Versatile FASTA/FASTQ demultiplexer.
total releases 9latest release November 13, 2021most recent commit 7 months ago
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