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The Top 23 Python Electrophysiology Open Source Projects

Open source projects categorized as Python Electrophysiology
Categories > Electrophysiology
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13most recent commit 6 months agopypi fooof} Downloads
Phy ⭐ 291
phy: interactive visualization and manual spike sorting of large-scale ephys data
dependent packages 2total releases 26most recent commit 6 months agopypi phy} Downloads
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394most recent commit 4 months agopypi bluepyopt} Downloads
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25most recent commit 3 months agopypi elephant} Downloads
Neurora ⭐ 130
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
dependent packages 1total releases 150most recent commit a year agopypi neurora} Downloads
Spectral_connectivity ⭐ 109
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
dependent packages 3total releases 16most recent commit 6 months agopypi spectral-connectivity} Downloads
Ecephys_spike_sorting ⭐ 93
Modules for processing extracellular electrophysiology data from Neuropixels probes
dependent packages 1total releases 2most recent commit 4 months agopypi forked-ecephys-spike-sorting} Downloads
Neuropyxels ⭐ 87
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
total releases 67most recent commit 3 months ago
Pyabf ⭐ 86
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 7total releases 65most recent commit 8 months agopypi pyabf} Downloads
Hnn ⭐ 73
The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.
most recent commit 5 months ago
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321most recent commit 3 months agopypi efel} Downloads
Pysiology ⭐ 54
A Python package for physyological's signals processing
total releases 8most recent commit 6 months ago
Spyglass ⭐ 50
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
total releases 11most recent commit 3 months ago
Combinato ⭐ 36
Automatic spike sorting, cluster visualization, spike sorting GUIs
most recent commit 5 months ago
Pyret ⭐ 35
Python tools for analysis of neurophysiology data
total releases 13most recent commit 7 months ago
Nelpy ⭐ 31
Neuroelectrophysiology object model and data analysis in Python.
total releases 14most recent commit 3 years ago
Neuroglia ⭐ 30
a Python machine learning library for neurophysiology data
total releases 1most recent commit 5 years ago
Neuroshapes ⭐ 29
Open schemas for F.A.I.R. neuroscience data
most recent commit 3 years ago
Biopeaks ⭐ 28
biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals
total releases 19most recent commit 2 years ago
Neurotic ⭐ 25
Curate, visualize, annotate, and share your behavioral ephys data using Python
total releases 20most recent commit a year ago
Phy Contrib ⭐ 24
[This repository is archived, will be deprecated after the release of phy 2.0]
most recent commit 5 years ago
Hs2 ⭐ 24
Software for high density electrophysiology
dependent packages 4total releases 10most recent commit 10 months agopypi herdingspikes} Downloads
Axopy ⭐ 22
A Python Library for Implementing Human-Computer Interface Experiments
total releases 7most recent commit 10 months ago
The 10 Most Depended On Python Electrophysiology Open Source Projects
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25latest release November 10, 2023most recent commit 3 months agopypi elephant} Downloads
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321latest release November 22, 2023most recent commit 3 months agopypi efel} Downloads
Pyabf ⭐ 86
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 7total releases 65latest release August 02, 2023most recent commit 8 months agopypi pyabf} Downloads
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394latest release October 23, 2023most recent commit 4 months agopypi bluepyopt} Downloads
Mtscomp ⭐ 17
Multichannel time series lossless compression in pure Python based on NumPy and zlib
dependent packages 6total releases 5latest release May 11, 2021most recent commit 2 years agopypi mtscomp} Downloads
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13latest release September 20, 2023most recent commit 6 months agopypi fooof} Downloads
Hs2 ⭐ 24
Software for high density electrophysiology
dependent packages 4total releases 10latest release June 26, 2022most recent commit 10 months agopypi herdingspikes} Downloads
Spectral_connectivity ⭐ 109
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
dependent packages 3total releases 16latest release July 19, 2023most recent commit 6 months agopypi spectral-connectivity} Downloads
Phy ⭐ 291
phy: interactive visualization and manual spike sorting of large-scale ephys data
dependent packages 2total releases 26latest release September 07, 2021most recent commit 6 months agopypi phy} Downloads
Shybrid ⭐ 9
a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
dependent packages 2total releases 8latest release October 20, 2021most recent commit 2 years agopypi shybrid} Downloads
The 10 Latest Releases In Python Electrophysiology Open Source Projects
Sanpy ⭐ 11
SanPy is software for whole-cell current clamp analysis.
total releases 7latest release November 27, 2023most recent commit 3 months ago
Efel ⭐ 60
Electrophys Feature Extraction Library
dependent packages 9total releases 321latest release November 22, 2023most recent commit 3 months agopypi efel} Downloads
Elephant ⭐ 174
Elephant is the Electrophysiology Analysis Toolkit
dependent packages 14total releases 25latest release November 10, 2023most recent commit 3 months agopypi elephant} Downloads
Spyglass ⭐ 50
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
total releases 11latest release October 23, 2023most recent commit 3 months ago
Bluepyopt ⭐ 190
Blue Brain Python Optimisation Library
dependent packages 7total releases 394latest release October 23, 2023most recent commit 4 months agopypi bluepyopt} Downloads
Fooof ⭐ 307
Parameterizing neural power spectra into periodic & aperiodic components.
dependent packages 5total releases 13latest release September 20, 2023most recent commit 6 months agopypi fooof} Downloads
Spikewrap ⭐ 8
total releases 1latest release August 03, 2023most recent commit 4 months ago
Pyabf ⭐ 86
pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
dependent packages 7total releases 65latest release August 02, 2023most recent commit 8 months agopypi pyabf} Downloads
Ecephys_spike_sorting ⭐ 93
Modules for processing extracellular electrophysiology data from Neuropixels probes
dependent packages 1total releases 2latest release August 01, 2023most recent commit 4 months agopypi forked-ecephys-spike-sorting} Downloads
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