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The Top 23 Dna Methylation Open Source Projects

Open source projects categorized as Dna Methylation
Categories > Dna Methylation
Methylseq ⭐ 121
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
most recent commit 5 months ago
Methylpy ⭐ 116
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
most recent commit a year ago
Wgbs_tools ⭐ 100
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
most recent commit 5 months ago
Viewbs ⭐ 74
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
most recent commit a year ago
Biscuit ⭐ 61
BISulfite-seq CUI Toolkit
most recent commit 10 months ago
Sesame ⭐ 43
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
most recent commit 5 months ago
Dna Methylation Analysis ⭐ 42
DNA methylation analysis notes from Ming Tang
most recent commit 5 years ago
Mnp_training ⭐ 38
DNA methylation-based classification of central nervous system tumours
most recent commit a year ago
Dmrichr ⭐ 33
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
most recent commit 9 months ago
Metheor ⭐ 26
☄️ Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
most recent commit a year ago
Nanome ⭐ 23
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
most recent commit 10 months ago
Methrix ⭐ 22
An R 📦 for fast and flexible DNA methylation analysis
most recent commit 9 months ago
Methylstar ⭐ 16
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
most recent commit 3 years ago
Reptile ⭐ 15
Predicting regulatory DNA elements based on epigenomic signatures
total releases 1most recent commit 6 years ago
Methylsig ⭐ 14
R package for DNA methylation analysis
most recent commit a year ago
Bprmeth ⭐ 14
Modelling DNA methylation profiles
most recent commit 4 years ago
Tfregulomer ⭐ 13
TFregulomeR reveals transcription factors’ context-specific features and functions
most recent commit 2 years ago
Cpg_me ⭐ 10
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
most recent commit 2 years ago
Scbs ⭐ 10
Python package with CLI for downstream analysis of single cell methylation data.
most recent commit 7 months ago
Pames ⭐ 10
Tool to estimate purity of tumor samples exploiting DNA Methylation data
most recent commit 2 years ago
Biomm ⭐ 9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
most recent commit a year ago
Cocoa ⭐ 9
Annotating epigenetic variation among samples with region sets in R
most recent commit 10 months ago
Deconvr ⭐ 7
The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.
most recent commit a year ago
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