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The Top 23 Cwl Open Source Projects

Open source projects categorized as Cwl
Common Workflow Language ⭐ 1,425
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
total releases 2most recent commit 5 months ago
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit 3 months agopypi toil} Downloads
Aws Secure Environment Accelerator ⭐ 698
The AWS Secure Environment Accelerator is a tool designed to help deploy and operate secure multi-account, multi-region AWS environments on an ongoing basis. The power of the solution is the configuration file which enables the completely automated deployment of customizable architectures within AWS without changing a single line of code.
most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430most recent commit 3 months agopypi cwltool} Downloads
Composer ⭐ 285
Visual and code editor for Common Workflow Language
dependent packages 2total releases 1most recent commit a year agonpm cottontail-frontend} Downloads
Pgap ⭐ 263
NCBI Prokaryotic Genome Annotation Pipeline
most recent commit 3 months ago
Cwl Airflow ⭐ 178
Python package to extend Airflow functionality with CWL1.1 support
total releases 38most recent commit 6 months ago
Captk ⭐ 131
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
most recent commit 2 years ago
Cromwellonazure ⭐ 125
Microsoft Genomics supported implementation of the Broad Institute's Cromwell workflow engine on Azure
most recent commit 3 months ago
Reana ⭐ 114
REANA: Reusable research data analysis platform
most recent commit 3 months ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Rabix ⭐ 104
[Historical] Reproducible Analyses for Bioinformatics
most recent commit 5 years ago
Analysis Workflows ⭐ 99
Open workflow definitions for genomic analysis from MGI at WUSM.
most recent commit 10 months ago
Legacy ⭐ 98
Deprecated
most recent commit 5 years ago
Emg Viral Pipeline ⭐ 98
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
most recent commit 7 months ago
Planemo ⭐ 85
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
dependent packages 2total releases 134most recent commit 4 months agopypi planemo} Downloads
Workflow Execution Service Schemas ⭐ 83
The WES API is a standard way to run and manage portable workflows.
most recent commit 7 months ago
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74most recent commit a year agonpm cwl-svg} Downloads
Bunny ⭐ 70
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
most recent commit 5 years ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Bio Cwl Tools ⭐ 65
CWL CommandLineTool descriptions for biology/life-sciences related applications
most recent commit 8 months ago
The 10 Most Depended On Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Cwl Utils ⭐ 30
Python utilities for CWL
dependent packages 13total releases 32latest release December 01, 2023most recent commit 3 months agopypi cwl-utils} Downloads
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Ro Crate Py ⭐ 37
Python library for RO-Crate
dependent packages 8total releases 15latest release October 13, 2023most recent commit 4 months agopypi rocrate} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwl Ts ⭐ 48
Typescript data model for Common Workflow Language
dependent packages 6total releases 291latest release January 17, 2023most recent commit a year agonpm cwlts} Downloads
Cwl Format ⭐ 9
A very opinionated code formatter for CWL
dependent packages 6total releases 6latest release February 18, 2022most recent commit 5 months agopypi cwlformat} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74latest release January 17, 2023most recent commit a year agonpm cwl-svg} Downloads
React Workflow Viz ⭐ 9
React component for visualizing CWL-like workflows (and similar data)
dependent packages 3total releases 11latest release September 19, 2023most recent commit 7 months agonpm @hms-dbmi-bgm/react-workflow-viz} Downloads
Cwltest ⭐ 16
Framework for testing CWL tools and workflows
dependent packages 3total releases 37latest release May 21, 2022most recent commit 3 months agopypi cwltest} Downloads
The 10 Latest Releases In Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Cwl Utils ⭐ 30
Python utilities for CWL
dependent packages 13total releases 32latest release December 01, 2023most recent commit 3 months agopypi cwl-utils} Downloads
Calrissian ⭐ 37
CWL on Kubernetes
total releases 19latest release November 23, 2023most recent commit 5 months ago
Cwl Upgrader ⭐ 5
Upgrade CWL syntax to a newer version
dependent packages 2total releases 24latest release November 13, 2023most recent commit 3 months agopypi cwl-upgrader} Downloads
Ro Crate Py ⭐ 37
Python library for RO-Crate
dependent packages 8total releases 15latest release October 13, 2023most recent commit 4 months agopypi rocrate} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
React Workflow Viz ⭐ 9
React component for visualizing CWL-like workflows (and similar data)
dependent packages 3total releases 11latest release September 19, 2023most recent commit 7 months agonpm @hms-dbmi-bgm/react-workflow-viz} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
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