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The Top 23 Cryo Em Open Source Projects

Open source projects categorized as Cryo Em
Categories > Cryo Em
Relion ⭐ 400
Image-processing software for cryo-electron microscopy
most recent commit 5 months ago
Cctbx_project ⭐ 197
Computational Crystallography Toolbox
dependent packages 4total releases 26most recent commit 5 months ago
Topaz ⭐ 146
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
dependent packages 1total releases 7most recent commit 7 months agopypi topaz-em} Downloads
Computational Cryoem ⭐ 73
A curated list of awesome computational cryo-EM methods.
most recent commit 5 months ago
Awesome Cryoem ⭐ 70
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
most recent commit 3 years ago
Isonet ⭐ 50
Self-supervised learning for isotropic cryoET reconstruction
most recent commit 7 months ago
Xmipp ⭐ 35
Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.
most recent commit 5 months ago
Deepemhancer ⭐ 35
Deep learning for cryo-EM maps post-processing
total releases 2most recent commit 10 months ago
Cryostar ⭐ 28
Leveraging Structural Prior and Constraints for Cryo-EM Heterogeneous Reconstruction
most recent commit 6 months ago
Focus ⭐ 27
High Throughput Electron Microscopy Image Processing Software
most recent commit a year ago
Cryosparc Tools ⭐ 26
Python library that enables scripting access to CryoSPARC, a cryo-EM software package.
most recent commit 5 months ago
Opusdsd ⭐ 26
deep structural disentanglement
most recent commit 5 months ago
Superpose3d ⭐ 26
register 3D point clouds using rotation, translation, and scale transformations.
total releases 26most recent commit 2 years ago
Privateer ⭐ 24
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
most recent commit 5 months ago
Tomotwin Cryoet ⭐ 24
cryo-ET particle picking using triplet networks and metric learning
most recent commit 5 months ago
Cryoread ⭐ 24
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
most recent commit 6 months ago
Tomobear ⭐ 21
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
most recent commit 6 months ago
Powerfit ⭐ 19
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
most recent commit 8 months ago
Noise2noise Cryo Em Image Denoising ⭐ 18
pytorch implementation of noise2noise for Cryo-EM image denoising
most recent commit 5 years ago
Artiax ⭐ 16
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
most recent commit a year ago
Emap2secplus ⭐ 15
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
most recent commit 9 months ago
3dem Conventions ⭐ 14
Conventions for 3DEM software packages
most recent commit 2 years ago
Starparser ⭐ 12
Manipulate and mine Relion .star files
most recent commit 9 months ago
The 2 Most Depended On Cryo Em Open Source Projects
Cctbx_project ⭐ 197
Computational Crystallography Toolbox
dependent packages 4total releases 26latest release November 03, 2022most recent commit 5 months ago
The 5 Latest Releases In Cryo Em Open Source Projects
Cctbx_project ⭐ 197
Computational Crystallography Toolbox
dependent packages 4total releases 26latest release November 03, 2022most recent commit 5 months ago
Mdcatch ⭐ 8
Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing
total releases 19latest release June 16, 2022most recent commit a year ago
Superpose3d ⭐ 26
register 3D point clouds using rotation, translation, and scale transformations.
total releases 26latest release March 21, 2022most recent commit 2 years ago
Deepemhancer ⭐ 35
Deep learning for cryo-EM maps post-processing
total releases 2latest release June 24, 2020most recent commit 10 months ago
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