Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Conda Genome Open Source Projects

Open source projects categorized as Conda Genome
Categories > Conda
Categories > Science > Genome
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Metawrap ⭐ 320
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
most recent commit 9 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Atac Seq Pipeline ⭐ 290
ENCODE ATAC-seq pipeline
most recent commit a year ago
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Gridss ⭐ 212
GRIDSS: the Genomic Rearrangement IDentification Software Suite
most recent commit a year ago
Chip Seq Pipeline2 ⭐ 188
ENCODE ChIP-seq pipeline
most recent commit 2 years ago
Gaas ⭐ 188
Genome Assembly and Annotation Service code
most recent commit 5 months ago
Raven ⭐ 177
De novo genome assembler for long uncorrected reads
most recent commit 6 months ago
Atac_dnase_pipelines ⭐ 135
ATAC-seq and DNase-seq processing pipeline
most recent commit 5 years ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18most recent commit 8 months ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 4 months ago
Ggd Recipes ⭐ 81
conda recipes for genomic data
most recent commit 3 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Panacota ⭐ 60
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
total releases 8most recent commit 7 months ago
Meteore ⭐ 58
Automatic DNA methylation detection from nanopore tools and their consensus model
most recent commit a year ago
Pirate ⭐ 58
A toolbox for pangenome analysis and threshold evaluation.
most recent commit 2 years ago
Ultra ⭐ 53
Long-read splice alignment with high accuracy
total releases 14most recent commit 10 months ago
Cadd Scripts ⭐ 50
CADD scripts release for offline scoring. For more information about CADD, please visit our website
most recent commit a year ago
Dchic ⭐ 44
dcHiC: Differential compartment analysis for Hi-C datasets
most recent commit 4 months ago
Ncov Tools ⭐ 44
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
most recent commit a year ago
Microbeannotator ⭐ 41
Pipeline for metabolic annotation of microbial genomes
total releases 10most recent commit 2 years ago
The 10 Latest Releases In Conda Genome Open Source Projects
Panacota ⭐ 60
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
total releases 8latest release January 03, 2023most recent commit 7 months ago
Zga ⭐ 6
ZGA prokaryotic genome assembly and annotation pipeline
total releases 22latest release December 02, 2022most recent commit a year ago
Ultra ⭐ 53
Long-read splice alignment with high accuracy
total releases 14latest release October 26, 2022most recent commit 10 months ago
Focus ⭐ 5
FOCUS: An Agile Profiler for Metagenomic Data
total releases 5latest release December 28, 2021most recent commit 2 years ago
Microbeannotator ⭐ 41
Pipeline for metabolic annotation of microbial genomes
total releases 10latest release April 27, 2021most recent commit 2 years ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52latest release March 09, 2021most recent commit 3 years ago
Biohansel ⭐ 21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
total releases 19latest release March 05, 2021most recent commit 3 years ago
Vcf Kit ⭐ 107
VCF-kit: Assorted utilities for the variant call format
total releases 18latest release December 20, 2020most recent commit 8 months ago
Abacat ⭐ 6
🥑 A Bacterial genome Comparison and Annotation Toolkit
total releases 2latest release April 04, 2020most recent commit 3 years ago
Riboseed ⭐ 5
pipeline for using ribosomal flanking regions to improve bacterial genome assembly
total releases 76latest release October 30, 2019most recent commit 4 years ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.