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The Top 19 Simulation Computational Biology Open Source Projects

Open source projects categorized as Simulation Computational Biology
Categories > Computational Biology
Categories > Science > Simulation
Opensim Core ⭐ 712
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
most recent commit 3 months ago
Pterasoftware ⭐ 136
Ptera Software is a fast, easy-to-use, and open-source software package for analyzing flapping-wing flight.
total releases 26most recent commit 8 months ago
Pycontact ⭐ 34
Analysis of non-covalent interactions in MD trajectories
total releases 2most recent commit a year ago
Myokit ⭐ 32
Myokit: A simple interface to cardiac cellular electrophysiology
dependent packages 6total releases 46most recent commit 3 months agopypi myokit} Downloads
Biomass ⭐ 23
A Python Framework for Modeling and Analysis of Signaling Systems
most recent commit 7 months ago
Patchsim ⭐ 21
Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
most recent commit 7 months ago
Doctoral Thesis ⭐ 17
Generation and Applications of Knowledge Graphs in Systems and Networks Biology
most recent commit 4 years ago
Biosimulators ⭐ 13
Registry of containerized biosimulation tools that support a standard command-line interface
most recent commit a year ago
Kisao ⭐ 9
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
dependent packages 18total releases 21most recent commit 5 months agopypi kisao} Downloads
Py Mcmd ⭐ 9
This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles
most recent commit 2 years ago
Biosimulators_test_suite ⭐ 7
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
total releases 88most recent commit 9 months ago
Optimus_bind_sample ⭐ 7
Designed to optimize the time/accuracy trade-off in predicting the effects of mutations on protein-protein binding
most recent commit 2 years ago
Advancesyntoolkit ⭐ 7
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
most recent commit 2 years ago
Wc_lang ⭐ 7
Language for describing whole-cell models as reaction networks
dependent packages 1total releases 1most recent commit 3 years agopypi wc-lang} Downloads
Intro_to_param_estim ⭐ 7
Parameter estimation of ODE models describing biological processes
most recent commit 4 years ago
Benchmarkfdr Shiny ⭐ 6
Shiny App for exploring results from "A practical guide to methods controlling false discoveries in computational biology"
most recent commit 4 years ago
Vcell Solvers ⭐ 6
Virtual Cell solvers
most recent commit 5 months ago
Simulated Evolution ⭐ 5
Artificial Life Simulation of Bacteria Motion depending on DNA
most recent commit 10 months ago
Gillespie ⭐ 5
Gillespie Stochastic Simulation Algorithm
most recent commit 11 years ago
The 3 Most Depended On Simulation Computational Biology Open Source Projects
Kisao ⭐ 9
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
dependent packages 18total releases 21latest release October 10, 2021most recent commit 5 months agopypi kisao} Downloads
Myokit ⭐ 32
Myokit: A simple interface to cardiac cellular electrophysiology
dependent packages 6total releases 46latest release October 12, 2023most recent commit 3 months agopypi myokit} Downloads
Wc_lang ⭐ 7
Language for describing whole-cell models as reaction networks
dependent packages 1total releases 1latest release January 20, 2019most recent commit 3 years agopypi wc-lang} Downloads
The 6 Latest Releases In Simulation Computational Biology Open Source Projects
Myokit ⭐ 32
Myokit: A simple interface to cardiac cellular electrophysiology
dependent packages 6total releases 46latest release October 12, 2023most recent commit 3 months agopypi myokit} Downloads
Kisao ⭐ 9
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
dependent packages 18total releases 21latest release October 10, 2021most recent commit 5 months agopypi kisao} Downloads
Pycontact ⭐ 34
Analysis of non-covalent interactions in MD trajectories
total releases 2latest release September 01, 2020most recent commit a year ago
Wc_lang ⭐ 7
Language for describing whole-cell models as reaction networks
dependent packages 1total releases 1latest release January 20, 2019most recent commit 3 years agopypi wc-lang} Downloads
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