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The Top 23 Genomics Computational Biology Open Source Projects

Open source projects categorized as Genomics Computational Biology
Categories > Computational Biology
Categories > Science > Genomics
Seq ⭐ 624
A high-performance, Pythonic language for bioinformatics
most recent commit a year ago
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Clair3 ⭐ 191
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
most recent commit 3 months ago
Souporcell ⭐ 134
Clustering scRNAseq by genotypes
most recent commit 6 months ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
Pyfeat ⭐ 68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
most recent commit 2 years ago
C.origami ⭐ 47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
total releases 1most recent commit 4 months ago
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4most recent commit 6 years ago
Lrsim ⭐ 38
10x Genomics Reads Simulator
most recent commit 5 years ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14most recent commit a year ago
Mural ⭐ 15
MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.
most recent commit 3 months ago
Pynteny ⭐ 13
Query sequence database by HMMs arranged in predefined synteny structure
total releases 1most recent commit 6 months ago
Clair3 Trio ⭐ 12
Clair3-Trio: variant calling in trio using Nanopore long-reads
most recent commit 6 months ago
Sting ⭐ 12
Ultrafast sequence typing and gene detection from NGS raw reads
most recent commit 3 years ago
Ngsderive ⭐ 10
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
total releases 24most recent commit 7 months ago
Positive Selection ⭐ 10
Scripts and procedures for detecting positively selected genes and codons in primates
most recent commit 3 years ago
Cvbio ⭐ 9
Artisanal 🤣 bioinformatics tools and pipelines in Scala
most recent commit 4 years ago
Bioix ⭐ 9
PCA on Genotypes
most recent commit a year ago
Deepbio ⭐ 8
This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.
most recent commit 4 years ago
Agebioportal ⭐ 7
R Shiny web application for aging-related diseases
most recent commit 6 years ago
Pyfeat 2.x ⭐ 6
Biological Feature Representation Tool form the Sequences
most recent commit 2 years ago
The 2 Most Depended On Genomics Computational Biology Open Source Projects
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
Slow5 Rs ⭐ 5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
dependent packages 1total releases 11latest release September 04, 2023most recent commit 8 months agocargo slow5lib-sys} Downloads
The 6 Latest Releases In Genomics Computational Biology Open Source Projects
Slow5 Rs ⭐ 5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
dependent packages 1total releases 11latest release September 04, 2023most recent commit 8 months agocargo slow5lib-sys} Downloads
C.origami ⭐ 47
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
total releases 1latest release November 28, 2022most recent commit 4 months ago
Pynteny ⭐ 13
Query sequence database by HMMs arranged in predefined synteny structure
total releases 1latest release October 13, 2022most recent commit 6 months ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14latest release September 10, 2021most recent commit a year ago
Liblevenshtein Java ⭐ 40
Various utilities regarding Levenshtein transducers. (Java)
dependent packages 10total releases 4latest release May 29, 2016most recent commit 6 years ago
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