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The Top 23 Clinical Data Open Source Projects

Open source projects categorized as Clinical Data
Categories > Clinical Data
Pyhealth ⭐ 825
A Deep Learning Python Toolkit for Healthcare Applications.
total releases 15most recent commit 5 months ago
Mimic3 Benchmarks ⭐ 661
Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.
most recent commit a year ago
Clinical_quality_language ⭐ 238
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
dependent packages 21total releases 53most recent commit 5 months ago
Ehrbase ⭐ 195
An open source openEHR server
dependent packages 3total releases 21most recent commit 5 months ago
Deepehr ⭐ 193
Chronic Disease Prediction Using Medical Notes
most recent commit 5 years ago
Cabolabs Ehrserver ⭐ 149
Open platform to manage and share standardized clinical data, designed by @ppazos at CaboLabs Health Informatics.
most recent commit a year ago
Pandora ⭐ 127
PANDORA Advanced Machine Learning for Data Integration, Analysis, and Insightful Discoveries in Health and Disease 💻
most recent commit 8 months ago
Clicr ⭐ 108
Machine reading comprehension on clinical case reports
most recent commit 4 years ago
Cnn_design_for_ad ⭐ 67
Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"
most recent commit 2 years ago
Clinical Trial Outcome Prediction ⭐ 60
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
most recent commit a year ago
Cyclops ⭐ 59
Toolkit for health ML implementation
total releases 42most recent commit 6 months ago
Oaprogression ⭐ 58
Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data
most recent commit 3 years ago
Cohort360 ⭐ 36
A web application to find patients, build cohorts and visualize health records
most recent commit 5 months ago
Ctrdata ⭐ 32
Aggregate and analyse information on clinical trials from public registers
total releases 40most recent commit 5 months ago
Oadat ⭐ 25
OADAT: Experimental and Synthetic Clinical Optoacoustic Data for Standardized Image Processing
most recent commit 10 months ago
Medkit ⭐ 22
This repository is now archived. Further development has been moved to https://github.com/medkit-lib/medkit.
most recent commit 7 months ago
Patient Instructions ⭐ 20
Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Patient Instructions" (NeurIPS 2022)
most recent commit 9 months ago
Medcattutorials ⭐ 18
General tutorials for the setup and use of MedCAT.
most recent commit 7 months ago
Yaib ⭐ 15
🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
total releases 2most recent commit 7 months ago
Icd_gems.jl ⭐ 13
ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
most recent commit 2 years ago
Medkit Learn ⭐ 9
The Medkit-Learn(ing) Environment: Medical Decision Modelling through Simulation (NeurIPS 2021) by Alex J. Chan, Ioana Bica, Alihan Huyuk, Daniel Jarrett, and Mihaela van der Schaar.
total releases 1most recent commit 2 years ago
Fhir Qi Core ⭐ 6
Quality Improvement Core FHIR Profiles
most recent commit 5 months ago
Diagnosisextraction_ml ⭐ 6
Pipeline for building Machine Learning Classifiers for the diagnosis of EHR text-data. We used this pipeline for our study, published here: https://doi.org/10.2196/23930.
most recent commit 2 years ago
The 2 Most Depended On Clinical Data Open Source Projects
The 7 Latest Releases In Clinical Data Open Source Projects
Cyclops ⭐ 59
Toolkit for health ML implementation
total releases 42latest release November 28, 2023most recent commit 6 months ago
Ctrdata ⭐ 32
Aggregate and analyse information on clinical trials from public registers
total releases 40latest release November 24, 2023most recent commit 5 months ago
Ehrbase ⭐ 195
An open source openEHR server
dependent packages 3total releases 21latest release September 27, 2023most recent commit 5 months ago
Pyhealth ⭐ 825
A Deep Learning Python Toolkit for Healthcare Applications.
total releases 15latest release January 24, 2023most recent commit 5 months ago
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