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The Top 14 Variants Cancer Open Source Projects

Open source projects categorized as Variants Cancer
Categories > Cancer
Categories > Variants
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Awesome Cancer Variant Databases ⭐ 284
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
most recent commit 6 months ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
Mutscan ⭐ 127
Detect and visualize target mutations by scanning FastQ files directly
most recent commit 2 years ago
Cpsr ⭐ 50
Cancer Predisposition Sequencing Reporter (CPSR)
most recent commit 9 months ago
Civic Client ⭐ 49
Web client for CIViC: Clinical Interpretations of Variants in Cancer
most recent commit 2 years ago
Civic Server ⭐ 39
Backend Server for CIViC Project
most recent commit 10 months ago
Iarc Nf ⭐ 35
List of IARC bioinformatics nextflow pipelines
most recent commit a year ago
Cacao ⭐ 22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
most recent commit 3 years ago
Mageri ⭐ 19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
most recent commit 7 years ago
Civic V2 ⭐ 18
CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer
most recent commit 4 months ago
Pdx_exomeseq ⭐ 9
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
most recent commit 6 years ago
Mgp1000 ⭐ 7
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
most recent commit 4 months ago
Fings ⭐ 6
Filters for Next Generation Sequencing
most recent commit 2 years ago
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