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The Top 23 C Plus Plus Fastq Open Source Projects

Open source projects categorized as C Plus Plus Fastq
Categories > Programming Languages > C Plus Plus
Categories > Fastq
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Bwa Mem2 ⭐ 645
The next version of bwa-mem
most recent commit 4 months ago
Vsearch ⭐ 605
Versatile open-source tool for microbiome analysis
total releases 1most recent commit 3 months ago
Seqan3 ⭐ 373
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
most recent commit 3 months ago
Rmats Turbo ⭐ 144
most recent commit 6 months ago
Seed ⭐ 139
Efficient clustering of next generation sequences
most recent commit 6 years ago
Ngs Bits ⭐ 121
Short-read sequencing tools
most recent commit 3 months ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Beetl ⭐ 90
BEETL
most recent commit a year ago
Adapterremoval ⭐ 87
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
most recent commit 10 months ago
Soapnuke ⭐ 85
A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
most recent commit 8 months ago
Idba ⭐ 80
most recent commit 6 years ago
Ratatosk ⭐ 76
Hybrid error correction of long reads using colored de Bruijn graphs
most recent commit 9 months ago
Cobs ⭐ 58
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
most recent commit 2 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Rattle ⭐ 51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
most recent commit 4 months ago
Falco ⭐ 50
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
most recent commit 8 months ago
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
Raptor ⭐ 46
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
most recent commit 4 months ago
W2rap Contigger ⭐ 44
An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.
most recent commit a year ago
Pbsim2 ⭐ 40
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
most recent commit 2 years ago
Antonie ⭐ 36
Antonie is an integrated, robust, reliable and fast processor of DNA reads
most recent commit 5 years ago
Kseqpp ⭐ 34
Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
most recent commit a year ago
The 2 Latest Releases In C Plus Plus Fastq Open Source Projects
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Vsearch ⭐ 605
Versatile open-source tool for microbiome analysis
total releases 1latest release March 03, 2021most recent commit 3 months ago
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