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The Top 23 Biostatistics Open Source Projects

Open source projects categorized as Biostatistics
Categories > Biostatistics
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18most recent commit 2 years agonuget BioFSharp} Downloads
Survex ⭐ 79
Explainable Machine Learning in Survival Analysis
total releases 4most recent commit 6 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 6 months ago
Survshap ⭐ 65
SurvSHAP(t): Time-dependent explanations of machine learning survival models
most recent commit 6 months ago
Tlverse Handbook ⭐ 51
🎯 📕 Targeted Learning in R: A Causal Data Science Handbook
most recent commit a year ago
Gsdesign ⭐ 44
Group sequential design for clinical trials
most recent commit 5 months ago
Confounds ⭐ 35
Conquering confounds and covariates in machine learning
dependent packages 1total releases 6most recent commit a year agopypi confounds} Downloads
Dmrichr ⭐ 33
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
most recent commit 9 months ago
Handbook_of_biostatistic_r ⭐ 32
📗handbook of biostatistic and R
most recent commit 6 years ago
Rsimsum ⭐ 24
Analysis of simulation studies including Monte Carlo error
most recent commit 6 months ago
Joinerml ⭐ 24
R package for fitting joint models to time-to-event data and multivariate longitudinal data
most recent commit a year ago
Omicspls ⭐ 20
R package for High dimensional data analysis and integration with O2PLS!
most recent commit 2 years ago
Pygna ⭐ 20
A Python package for gene network analysis
total releases 35most recent commit 2 years ago
Mediana ⭐ 14
Clinical Trial Simulations
total releases 9most recent commit 3 years ago
Joiner ⭐ 13
R package for fitting joint models to time-to-event and longitudinal data
dependent packages 2total releases 13most recent commit a year ago
Pmoss ⭐ 11
pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets
most recent commit 2 years ago
Ps ⭐ 11
Power and Sample Size Calculation
most recent commit 2 years ago
Missingdata ⭐ 9
missing data handing: visualize and impute
total releases 5most recent commit 5 years ago
Dsfair ⭐ 9
📊🌱 Data Science for Agriculture in R
most recent commit a year ago
Locus ⭐ 9
locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression
most recent commit 6 months ago
Sashelp ⭐ 8
SAS code snippets
most recent commit 5 years ago
Bios_clone ⭐ 8
🖥Program based on BIOS to help people to understand BIOS, written on cpp
most recent commit 5 months ago
Medstats ⭐ 7
Collection of scripts and modules for biostatistics and data science simple automation for research process.
most recent commit 5 months ago
The 3 Most Depended On Biostatistics Open Source Projects
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Joiner ⭐ 13
R package for fitting joint models to time-to-event and longitudinal data
dependent packages 2total releases 13latest release January 22, 2023most recent commit a year ago
Confounds ⭐ 35
Conquering confounds and covariates in machine learning
dependent packages 1total releases 6latest release March 07, 2022most recent commit a year agopypi confounds} Downloads
The 10 Latest Releases In Biostatistics Open Source Projects
Survex ⭐ 79
Explainable Machine Learning in Survival Analysis
total releases 4latest release September 06, 2023most recent commit 6 months ago
Joiner ⭐ 13
R package for fitting joint models to time-to-event and longitudinal data
dependent packages 2total releases 13latest release January 22, 2023most recent commit a year ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Confounds ⭐ 35
Conquering confounds and covariates in machine learning
dependent packages 1total releases 6latest release March 07, 2022most recent commit a year agopypi confounds} Downloads
Replicatebe ⭐ 6
Comparative BA-calculation for the EMA's Average Bioequivalence with Expanding Limits (ABEL)
total releases 12latest release February 12, 2022most recent commit 2 years ago
Pygna ⭐ 20
A Python package for gene network analysis
total releases 35latest release January 05, 2022most recent commit 2 years ago
Inctools ⭐ 5
Incidence Estimation Tools
total releases 1latest release November 11, 2019most recent commit 3 years ago
Missingdata ⭐ 9
missing data handing: visualize and impute
total releases 5latest release July 30, 2019most recent commit 5 years ago
Mediana ⭐ 14
Clinical Trial Simulations
total releases 9latest release May 08, 2019most recent commit 3 years ago
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