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The Top 23 Python Biomedical Open Source Projects

Open source projects categorized as Python Biomedical
Categories > Biomedical
Chineseblue ⭐ 212
Chinese Biomedical Language Understanding Evaluation benchmark (ChineseBLUE)
most recent commit 3 years ago
Biocypher ⭐ 160
A unifying framework for biomedical research knowledge graphs
dependent packages 1total releases 28most recent commit 3 months agopypi biocypher} Downloads
Repmode ⭐ 148
[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".
most recent commit 6 months ago
Visual Med Alpaca ⭐ 120
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
most recent commit a year ago
Scirun ⭐ 118
SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
most recent commit 6 months ago
Mol Instructions ⭐ 116
Mol-Instructions is a Large-Scale Biomolecules Instruction Dataset for Large Language Models.
most recent commit 5 months ago
Sleepeegnet ⭐ 106
SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach
most recent commit 3 years ago
Bran ⭐ 102
Full abstract relation extraction from biological texts with bi-affine relation attention networks
most recent commit 5 years ago
Amazon Weak Ner Needle ⭐ 92
Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data
most recent commit a year ago
Medtype ⭐ 85
MedType: Improving Medical Entity Linking with Semantic Type Prediction
most recent commit 2 years ago
Mediar ⭐ 83
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
most recent commit 5 months ago
Typedb Bio ⭐ 67
TypeDB Bio: Biomedical Knowledge Graph
most recent commit 9 months ago
Kebiolm ⭐ 58
Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
most recent commit a year ago
Trove ⭐ 57
Weakly supervised medical named entity classification
most recent commit 2 years ago
Bio Epidemiology Ner ⭐ 55
Recognize bio-medical entities from a text corpus
total releases 13most recent commit 10 months ago
Farabio ⭐ 48
🤖 PyTorch toolkit for biomedical imaging ❤️
total releases 3most recent commit 2 years ago
Samri ⭐ 39
Small Animal Magnetic Resonance Imaging via Python.
most recent commit 7 months ago
Eidolon ⭐ 35
Biomedical Visualization and Analysis Framework
most recent commit 5 months ago
Miracl ⭐ 29
Multi-modal Image Registration And Connectivity anaLysis
most recent commit 3 months ago
Fedbiomed ⭐ 28
A collaborative learning framework for empowering biomedical research
most recent commit 3 months ago
Biobart ⭐ 27
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]
most recent commit 2 years ago
Pyradigm ⭐ 24
Research data management in biomedical and machine learning applications
dependent packages 4total releases 21most recent commit a year agopypi pyradigm} Downloads
Morphman ⭐ 24
A collection of tools for manipulation of morphological features in patient-specific geometries
most recent commit 2 years ago
The 2 Most Depended On Python Biomedical Open Source Projects
Pyradigm ⭐ 24
Research data management in biomedical and machine learning applications
dependent packages 4total releases 21latest release July 22, 2020most recent commit a year agopypi pyradigm} Downloads
Biocypher ⭐ 160
A unifying framework for biomedical research knowledge graphs
dependent packages 1total releases 28latest release November 20, 2023most recent commit 3 months agopypi biocypher} Downloads
The 4 Latest Releases In Python Biomedical Open Source Projects
Biocypher ⭐ 160
A unifying framework for biomedical research knowledge graphs
dependent packages 1total releases 28latest release November 20, 2023most recent commit 3 months agopypi biocypher} Downloads
Bio Epidemiology Ner ⭐ 55
Recognize bio-medical entities from a text corpus
total releases 13latest release August 09, 2022most recent commit 10 months ago
Farabio ⭐ 48
:robot: PyTorch toolkit for biomedical imaging :heart:
total releases 3latest release August 25, 2021most recent commit 2 years ago
Pyradigm ⭐ 24
Research data management in biomedical and machine learning applications
dependent packages 4total releases 21latest release July 22, 2020most recent commit a year agopypi pyradigm} Downloads
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