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The Top 9 Python Biomedical Informatics Open Source Projects

Open source projects categorized as Python Biomedical Informatics

Categories > Biomedical Informatics

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BaranziniLab/KG_RAG ⭐ 114

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

dependent packages 0 total releases 0 most recent commit over 2 years ago

AnthonyMRios/pymetamap ⭐ 103

Python wraper for MetaMap

dependent packages 0 total releases 0 most recent commit almost 6 years ago

deweylab/MetaSRA-pipeline ⭐ 42

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

dependent packages 0 total releases 0 most recent commit over 2 years ago

ram-compbio/CANDO ⭐ 29

Computational Analysis of Novel Drug Opportunities

dependent packages 0 total releases 0 most recent commit over 3 years ago

AnthonyMRios/multi-label-zero-shot ⭐ 22

Few- and Zero-shot Multi-Label Learning for Structured Label Spaces

dependent packages 0 total releases 0 most recent commit about 6 years ago

rcolinp/clinical_informatics_umls ⭐ 22

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL and MariaDB all covered within this repo. Next the UMLS subset which is stored in a relational DB will be queried, modeled and lastly loaded into a d...

dependent packages 0 total releases 0 most recent commit over 2 years ago

Sage-Bionetworks/schematic ⭐ 19

Package for biomedical data model and metadata ingress management

dependent packages 0 total releases 0 most recent commit over 2 years ago

suamin/MedDistant19 ⭐ 8

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

dependent packages 0 total releases 0 most recent commit over 3 years ago

monarch-initiative/omim ⭐ 6

Data ingest pipeline for OMIM.

dependent packages 0 total releases 0 most recent commit over 2 years ago

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