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The Top 9 Python Biomedical Informatics Open Source Projects

Open source projects categorized as Python Biomedical Informatics
Categories > Biomedical Informatics
Kg_rag ⭐ 114
Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks
most recent commit 4 months ago
Pymetamap ⭐ 103
Python wraper for MetaMap
total releases 1most recent commit 4 years ago
Metasra Pipeline ⭐ 42
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
most recent commit 5 months ago
Cando ⭐ 29
Computational Analysis of Novel Drug Opportunities
most recent commit a year ago
Multi Label Zero Shot ⭐ 22
Few- and Zero-shot Multi-Label Learning for Structured Label Spaces
most recent commit 4 years ago
Clinical_informatics_umls ⭐ 22
An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL and MariaDB all covered within this repo. Next the UMLS subset which is stored in a relational DB will be queried, modeled and lastly loaded into a defi
most recent commit 7 months ago
Schematic ⭐ 19
Package for biomedical data model and metadata ingress management
total releases 5most recent commit 4 months ago
Meddistant19 ⭐ 8
MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
most recent commit 2 years ago
Omim ⭐ 6
Data ingest pipeline for OMIM.
most recent commit 7 months ago
The 2 Latest Releases In Python Biomedical Informatics Open Source Projects
Schematic ⭐ 19
Package for biomedical data model and metadata ingress management
total releases 5latest release June 23, 2021most recent commit 4 months ago
Pymetamap ⭐ 103
Python wraper for MetaMap
total releases 1latest release February 09, 2018most recent commit 4 years ago
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