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The Top 23 Bioinformatics Sequencing Open Source Projects

Open source projects categorized as Bioinformatics Sequencing
Categories > Data Processing > Bioinformatics
Categories > Science > Sequencing
Polyrad ⭐ 22
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
most recent commit 5 months ago
Basic ⭐ 21
most recent commit 7 years ago
Gff3toembl ⭐ 20
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
most recent commit 5 years ago
Samql ⭐ 20
SQL-like query language for the SAM/BAM file format
most recent commit 7 months ago
Samstat ⭐ 20
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
most recent commit 9 months ago
Helmsman ⭐ 19
highly-efficient & lightweight mutation signature matrix aggregation
most recent commit 3 years ago
Seqmaker.jl ⭐ 19
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
most recent commit 7 years ago
Mageri ⭐ 19
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
most recent commit 7 years ago
Immunedb ⭐ 19
ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
total releases 32most recent commit 4 months ago
Catt ⭐ 18
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
most recent commit 6 months ago
Gatk4_best_practice ⭐ 18
GATK4 Best Practice Nextflow Pipeline
most recent commit 6 years ago
Piquant ⭐ 18
A pipeline to assess the quantification of transcripts.
most recent commit 2 years ago
Ngcgh ⭐ 17
Tools for producing pseudo-cgh of next-generation sequencing data
total releases 14most recent commit 8 years ago
Taeper ⭐ 16
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
total releases 1most recent commit 6 years ago
Bioutils ⭐ 16
provides common tools and lookup tables used primarily by the hgvs and uta packages
dependent packages 8total releases 62most recent commit 4 months agopypi bioutils} Downloads
Plasmidtron ⭐ 16
Assembling the cause of phenotypes and genotypes from NGS data
most recent commit 4 years ago
Vargeno ⭐ 15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
most recent commit 5 years ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14most recent commit 9 months ago
Sc2 Illumina Pipeline ⭐ 14
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
most recent commit 3 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3most recent commit 10 months ago
Saffrontree ⭐ 14
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
most recent commit 4 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13most recent commit 3 years ago
Npreader ⭐ 14
Read nanopore sequence reads in real-time
most recent commit 7 years ago
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