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The Top 23 Rust Bioinformatics Open Source Projects

Open source projects categorized as Rust Bioinformatics
Categories > Data Processing > Bioinformatics
Rust Bio ⭐ 1,428
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
dependent packages 89total releases 87most recent commit 4 months agocargo bio} Downloads
Sourmash ⭐ 431
Quickly search, compare, and analyze genomic and metagenomic data sets.
dependent packages 16total releases 67most recent commit a month agopypi sourmash} Downloads
Noodles ⭐ 384
Bioinformatics I/O libraries in Rust
dependent packages 29total releases 61most recent commit 3 months agocargo noodles} Downloads
Sage ⭐ 173
Proteomics search & quantification so fast that it feels like magic
most recent commit 4 months ago
Rasusa ⭐ 156
Randomly subsample sequencing reads to a specified coverage
total releases 11most recent commit 4 months ago
Best ⭐ 113
Bam Error Stats Tool (best): analysis of error types in aligned reads.
most recent commit 6 months ago
Block Aligner ⭐ 111
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
total releases 10most recent commit 8 months ago
Skani ⭐ 101
Fast, robust ANI and aligned fraction for metagenomic genomes and contigs.
total releases 2most recent commit 7 months ago
Perbase ⭐ 100
Per-base per-nucleotide depth analysis
total releases 21most recent commit 7 months ago
Fqgrep ⭐ 75
Grep for FASTQ files
total releases 2most recent commit a year ago
Telomeric Identifier ⭐ 73
Identify and find telomeres, or telomeric repeats in a genome.
total releases 5most recent commit 6 months ago
Ggcat ⭐ 60
Compacted and colored de Bruijn graph construction and querying
most recent commit 4 months ago
Yacrd ⭐ 59
Yet Another Chimeric Read Detector
total releases 8most recent commit 2 years ago
Fasten ⭐ 57
👷 Fasten toolkit, for streaming operations on fastq files
total releases 8most recent commit 5 months ago
Transanno ⭐ 54
accurate LiftOver tool for new genome assemblies
most recent commit 5 months ago
Fq ⭐ 54
Command line utility for manipulating Illumina-generated FASTQ files.
total releases 3most recent commit 5 months ago
Cute Nucleotides ⭐ 53
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
most recent commit 3 years ago
Gccontent Benchmark ⭐ 49
Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
most recent commit a year ago
Minimap2 Rs ⭐ 46
Rust bindings to minimap2 library
dependent packages 1total releases 15most recent commit 5 months agocargo minimap2-sys} Downloads
Rust Lapper ⭐ 40
Rust implementation of a fast, easy, interval tree library nim-lapper
dependent packages 6total releases 26most recent commit a year agocargo rust-lapper} Downloads
Sequence_align ⭐ 39
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
dependent packages 1total releases 1most recent commit a year agopypi sequence-align} Downloads
Rustybam ⭐ 38
bioinformatics toolkit in rust
total releases 35most recent commit 8 months ago
Htsget Rs ⭐ 36
Rust htsget server
dependent packages 5total releases 15most recent commit 4 months agocargo htsget-config} Downloads
The 10 Most Depended On Rust Bioinformatics Open Source Projects
Noodles ⭐ 384
Bioinformatics I/O libraries in Rust
dependent packages 29total releases 61latest release November 14, 2023most recent commit 3 months agocargo noodles} Downloads
Sourmash ⭐ 431
Quickly search, compare, and analyze genomic and metagenomic data sets.
dependent packages 16total releases 67latest release September 15, 2023most recent commit a month agopypi sourmash} Downloads
Rust Lapper ⭐ 40
Rust implementation of a fast, easy, interval tree library nim-lapper
dependent packages 6total releases 26latest release September 12, 2022most recent commit a year agocargo rust-lapper} Downloads
Htsget Rs ⭐ 36
Rust htsget server
dependent packages 5total releases 15latest release November 02, 2023most recent commit 4 months agocargo htsget-config} Downloads
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 4 months agocargo exon-common} Downloads
Lightmotif ⭐ 28
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
dependent packages 3total releases 7latest release August 31, 2023most recent commit 5 months agocargo lightmotif} Downloads
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 5 months agopypi oxbow} Downloads
Slow5 Rs ⭐ 5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
dependent packages 1total releases 11latest release September 04, 2023most recent commit 8 months agocargo slow5lib-sys} Downloads
Minimap2 Rs ⭐ 46
Rust bindings to minimap2 library
dependent packages 1total releases 15latest release September 12, 2023most recent commit 5 months agocargo minimap2-sys} Downloads
The 10 Latest Releases In Rust Bioinformatics Open Source Projects
Ska.rust ⭐ 35
Split k-mer analysis – version 2
total releases 14latest release November 23, 2023most recent commit 6 months ago
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 4 months agocargo exon-common} Downloads
Noodles ⭐ 384
Bioinformatics I/O libraries in Rust
dependent packages 29total releases 61latest release November 14, 2023most recent commit 3 months agocargo noodles} Downloads
Sigalign ⭐ 10
A Similarity-Guided Alignment Algorithm
total releases 7latest release November 10, 2023most recent commit 4 months ago
Telomeric Identifier ⭐ 73
Identify and find telomeres, or telomeric repeats in a genome.
total releases 5latest release November 04, 2023most recent commit 6 months ago
Htsget Rs ⭐ 36
Rust htsget server
dependent packages 5total releases 15latest release November 02, 2023most recent commit 4 months agocargo htsget-config} Downloads
Fasten ⭐ 57
:construction_worker: Fasten toolkit, for streaming operations on fastq files
total releases 8latest release October 28, 2023most recent commit 5 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 5 months agopypi oxbow} Downloads
Uniprot.rs ⭐ 6
Rust data structures and parser for the Uniprot database(s).
total releases 11latest release October 18, 2023most recent commit 7 months ago
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