Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 R Bioinformatics Open Source Projects

Open source projects categorized as R Bioinformatics
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174most recent commit 3 months agopypi dash} Downloads
Adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 17total releases 14most recent commit 3 months ago
Dada2 ⭐ 428
Accurate sample inference from amplicon data with single nucleotide resolution
most recent commit 3 months ago
Maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
most recent commit 3 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Karyoploter ⭐ 278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
most recent commit 4 months ago
Immunarch ⭐ 256
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
most recent commit 8 months ago
Teachingdemos ⭐ 216
Bioinformatics related demos and tutorials using the R programming language
most recent commit a year ago
Smudgeplot ⭐ 200
Inference of ploidy and heterozygosity structure using whole genome sequencing data
most recent commit 3 months ago
Splatter ⭐ 195
Simple simulation of single-cell RNA sequencing data
most recent commit 6 months ago
Pecan ⭐ 193
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
most recent commit 3 months ago
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Youtubetutorials ⭐ 180
most recent commit 4 months ago
Bioc Refcard ⭐ 170
Bioconductor cheat sheet
most recent commit 2 years ago
Bigsnpr ⭐ 168
R package for the analysis of massive SNP arrays.
dependent packages 2total releases 15most recent commit 3 months ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Teachingmaterial ⭐ 161
Various teaching material
most recent commit 3 years ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Shinycircos ⭐ 145
an R/shiny application for creation of Circos plot interactively
most recent commit 2 years ago
Itol.toolkit ⭐ 137
Helper Functions for Interactive Tree Of Life (iTOL)
most recent commit 4 months ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Decontam ⭐ 122
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
most recent commit a year ago
Sigminer ⭐ 119
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/
total releases 32most recent commit 4 months ago
The 10 Most Depended On R Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Nmf ⭐ 94
NMF: A Flexible R package for Nonnegative Matrix Factorization
dependent packages 25total releases 31latest release March 20, 2023most recent commit 3 years ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Peptides ⭐ 71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dependent packages 4total releases 21latest release May 14, 2021most recent commit 4 months ago
Rdml ⭐ 20
RDML data import for R
dependent packages 3total releases 10latest release June 25, 2019most recent commit 2 years ago
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12latest release March 25, 2019most recent commit 4 years ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
The 10 Latest Releases In R Bioinformatics Open Source Projects
Dash ⭐ 19,976
Data Apps & Dashboards for Python. No JavaScript Required.
dependent packages 639total releases 174latest release November 28, 2023most recent commit 3 months agopypi dash} Downloads
Macrosyntr ⭐ 11
R package for comparison of synteny conservation at the genome-wide scale.
total releases 3latest release November 14, 2023most recent commit 5 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Tomicsvis ⭐ 50
Transcriptomics Visualization R package.
total releases 1latest release July 06, 2023most recent commit 4 months ago
Bigsnpr ⭐ 168
R package for the analysis of massive SNP arrays.
dependent packages 2total releases 15latest release March 28, 2023most recent commit 3 months ago
Nmf ⭐ 94
NMF: A Flexible R package for Nonnegative Matrix Factorization
dependent packages 25total releases 31latest release March 20, 2023most recent commit 3 years ago
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.