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The Top 23 Python Visualization Bioinformatics Open Source Projects

Open source projects categorized as Python Visualization Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > User Interface > Visualization
Dnafeaturesviewer ⭐ 500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30most recent commit 6 months agopypi dna-features-viewer} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 4 months agopypi pycirclize} Downloads
Clinker ⭐ 452
Gene cluster comparison figure generator
dependent packages 2total releases 29most recent commit 9 months agopypi clinker} Downloads
Anvio ⭐ 396
An analysis and visualization platform for 'omics data
most recent commit 3 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Hicexplorer ⭐ 197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
most recent commit 5 months ago
Pycomplexheatmap ⭐ 182
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
total releases 37most recent commit 5 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 6 months agopypi pygenomeviz} Downloads
Indra ⭐ 154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
dependent packages 7total releases 29most recent commit 3 months agopypi indra} Downloads
Oreilly Animal Books For Python ⭐ 123
O‘REILLY animal books for Python
most recent commit 2 years ago
Mavis ⭐ 65
Merging, Annotation, Validation, and Illustration of Structural variants
total releases 41most recent commit 8 months ago
Flexidot ⭐ 56
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
most recent commit 3 years ago
Emperor ⭐ 52
Emperor a tool for the analysis and visualization of large microbial ecology datasets
total releases 34most recent commit 10 months ago
Geneview ⭐ 51
Genomics data visualization in Python by using matplotlib.
dependent packages 1total releases 26most recent commit 4 months agopypi geneview} Downloads
Pymsaviz ⭐ 41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
total releases 6most recent commit 7 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5most recent commit 6 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Itolapi ⭐ 31
Python API for the Interactive Tree of Life (iTOL)
dependent packages 4total releases 20most recent commit 3 months agopypi itolapi} Downloads
Locuszoom Standalone ⭐ 30
Create regional association plots from GWAS or meta-analysis
most recent commit 4 years ago
Orthoevolution ⭐ 28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
total releases 2most recent commit a year ago
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7most recent commit 6 months agopypi cogclassifier} Downloads
Tagore ⭐ 21
The script presents a simple way to visualize features on human chromosome ideograms
total releases 7most recent commit a year ago
Mgcplotter ⭐ 20
Microbial Genome Circular plotting tool for comparative genomics using Circos
total releases 3most recent commit a year ago
The 10 Most Depended On Python Visualization Bioinformatics Open Source Projects
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Itolapi ⭐ 31
Python API for the Interactive Tree of Life (iTOL)
dependent packages 4total releases 20latest release January 15, 2023most recent commit 3 months agopypi itolapi} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
Clinker ⭐ 452
Gene cluster comparison figure generator
dependent packages 2total releases 29latest release December 09, 2022most recent commit 9 months agopypi clinker} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Cogclassifier ⭐ 27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
dependent packages 1total releases 7latest release September 07, 2022most recent commit 6 months agopypi cogclassifier} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Geneview ⭐ 51
Genomics data visualization in Python by using matplotlib.
dependent packages 1total releases 26latest release June 23, 2022most recent commit 4 months agopypi geneview} Downloads
The 10 Latest Releases In Python Visualization Bioinformatics Open Source Projects
Pycomplexheatmap ⭐ 182
PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
total releases 37latest release November 30, 2023most recent commit 5 months ago
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7latest release November 22, 2023most recent commit 5 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Aniclustermap ⭐ 38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
total releases 5latest release November 07, 2023most recent commit 6 months ago
Dnafeaturesviewer ⭐ 500
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
dependent packages 22total releases 30latest release November 01, 2023most recent commit 6 months agopypi dna-features-viewer} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 6 months agopypi pygenomeviz} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Mavis ⭐ 65
Merging, Annotation, Validation, and Illustration of Structural variants
total releases 41latest release August 17, 2023most recent commit 8 months ago
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 4 months agopypi pycirclize} Downloads
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