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The Top 23 Python Bioinformatics Vcf Open Source Projects

Open source projects categorized as Python Bioinformatics Vcf
Categories > Data Processing > Bioinformatics
Categories > Science > Vcf
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 5 months agopypi SigProfilerExtractor} Downloads
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42most recent commit 3 months agopypi snps} Downloads
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4most recent commit 4 years agopypi svtyper} Downloads
Vcfpy ⭐ 78
Python 3 library with good support for both reading and writing VCF
dependent packages 17total releases 24most recent commit 4 months agopypi vcfpy} Downloads
Sv2 ⭐ 50
Support Vector Structural Variation Genotyper
total releases 10most recent commit 4 years ago
Vembrane ⭐ 50
vembrane filters VCF records using python expressions
total releases 31most recent commit 7 months ago
Nphase ⭐ 39
Ploidy agnostic phasing pipeline and algorithm
total releases 27most recent commit 4 months ago
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44most recent commit 8 months agopypi fuc} Downloads
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Varsome Api Client Python ⭐ 26
Example client programs for Saphetor's VarSome annotation API
most recent commit 6 months ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14most recent commit 2 years ago
Helmsman ⭐ 19
highly-efficient & lightweight mutation signature matrix aggregation
most recent commit 3 years ago
Hmtnote ⭐ 15
Human mitochondrial variants annotation using HmtVar.
most recent commit 6 months ago
Mitty ⭐ 13
Seven Bridges Genomics aligner/caller debugging and analysis tools
total releases 4most recent commit 5 years ago
Rsidx ⭐ 12
Library for indexing VCF files for random access searches by rsID
most recent commit 8 months ago
Variantconvert ⭐ 9
A customizable genetic variants file format converter.
most recent commit 8 months ago
High Perf Bio ⭐ 9
Open-source toolkit that simplifies and speeds up work with bioinformatics data. high-perf-bio allows you easily upload VCF, BED or arbitrary tables to DB and execute popular bioinformatic queries without MongoDB Query Language knowledge.
most recent commit 10 months ago
Agaat ⭐ 7
Automated Tool for Global Screening Array analysis
most recent commit 6 months ago
Bamsplit ⭐ 7
Split a BAM file by haplotype support
most recent commit 6 years ago
The 6 Most Depended On Python Bioinformatics Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Vcfpy ⭐ 78
Python 3 library with good support for both reading and writing VCF
dependent packages 17total releases 24latest release November 28, 2022most recent commit 4 months agopypi vcfpy} Downloads
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42latest release June 06, 2022most recent commit 3 months agopypi snps} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4latest release September 04, 2019most recent commit 4 years agopypi svtyper} Downloads
The 10 Latest Releases In Python Bioinformatics Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Fuc ⭐ 38
Frequently used commands in bioinformatics
dependent packages 2total releases 44latest release September 09, 2023most recent commit 8 months agopypi fuc} Downloads
Vembrane ⭐ 50
vembrane filters VCF records using python expressions
total releases 31latest release July 26, 2023most recent commit 7 months ago
Vcfpy ⭐ 78
Python 3 library with good support for both reading and writing VCF
dependent packages 17total releases 24latest release November 28, 2022most recent commit 4 months agopypi vcfpy} Downloads
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14latest release July 06, 2022most recent commit 2 years ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42latest release June 06, 2022most recent commit 3 months agopypi snps} Downloads
Nphase ⭐ 39
Ploidy agnostic phasing pipeline and algorithm
total releases 27latest release April 21, 2022most recent commit 4 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Sv2 ⭐ 50
Support Vector Structural Variation Genotyper
total releases 10latest release December 17, 2019most recent commit 4 years ago
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