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The Top 23 Bioinformatics Proteomics Open Source Projects

Open source projects categorized as Bioinformatics Proteomics
Categories > Data Processing > Bioinformatics
Categories > Proteomics
Containers ⭐ 621
Bioinformatics containers
most recent commit 3 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Sage ⭐ 173
Proteomics search & quantification so fast that it feels like magic
most recent commit 3 months ago
Teachingmaterial ⭐ 161
Various teaching material
most recent commit 3 years ago
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17most recent commit 5 months ago
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Philosopher ⭐ 104
A complete toolkit for shotgun proteomics data analysis
most recent commit 3 months ago
Famsa ⭐ 101
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
most recent commit 2 years ago
Plass ⭐ 99
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
most recent commit a year ago
Msfragger ⭐ 83
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
most recent commit 4 months ago
Pyfeat ⭐ 68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
most recent commit 2 years ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Omiclearn ⭐ 50
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
most recent commit a year ago
Peptide Shaker ⭐ 41
Interpretation of proteomics identification results
most recent commit 4 months ago
Searchgui ⭐ 36
Highly adaptable common interface for proteomics search and de novo engines
most recent commit 4 months ago
Pdv ⭐ 35
PDV: an integrative proteomics data viewer
most recent commit 4 months ago
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26most recent commit 6 months agopypi mokapot} Downloads
Deeprtplus ⭐ 30
Deep (Transfer) Learning for Peptide Retention Time Prediction
most recent commit 3 years ago
Directlfq ⭐ 27
Fast and accurate label-free quantification for small and very large numbers of proteomes
most recent commit 3 months ago
Causalpath ⭐ 27
A project for exploring differentially active signaling paths related to proteomics datasets
most recent commit 4 months ago
Compomics Utilities ⭐ 26
Open source Java library for computational proteomics
most recent commit 4 months ago
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12most recent commit 3 months agocargo exon-common} Downloads
The 3 Most Depended On Bioinformatics Proteomics Open Source Projects
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Generator Biojs Webcomponents ⭐ 7
Generate all the boilerplate for your next BioJS tool!
dependent packages 2total releases 4latest release October 14, 2019most recent commit 3 years agonpm generator-biojs-webcomponents} Downloads
The 8 Latest Releases In Bioinformatics Proteomics Open Source Projects
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17latest release November 15, 2023most recent commit 5 months ago
Mokapot ⭐ 31
Fast and flexible semi-supervised learning for peptide detection in Python
dependent packages 5total releases 26latest release September 11, 2023most recent commit 6 months agopypi mokapot} Downloads
Synthedia ⭐ 5
Create synthetic DIA LC-MS/MS for proteomics experiments
total releases 4latest release November 07, 2022most recent commit a year ago
Pymultiomics ⭐ 9
Python toolbox for multi-omics data mapping and analysis
total releases 5latest release March 24, 2022most recent commit a year ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Generator Biojs Webcomponents ⭐ 7
Generate all the boilerplate for your next BioJS tool!
dependent packages 2total releases 4latest release October 14, 2019most recent commit 3 years agonpm generator-biojs-webcomponents} Downloads
Photon ⭐ 11
PHOsphoproteomic dissecTiOn using Networks
total releases 11latest release March 06, 2019most recent commit 5 years ago
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