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The Top 10 Java Bioinformatics Open Source Projects

Open source projects categorized as Java Bioinformatics
Categories  > Data Processing  > Bioinformatics
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broadinstitute/gatk ⭐ 1,549
Official code repository for GATK versions 4 and up
dependent packages 0 total releases 0 most recent commit over 2 years ago
bigdatagenomics/adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 0 total releases 0 most recent commit over 2 years ago
biojava/biojava ⭐ 564
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 0 total releases 0 most recent commit over 2 years ago
cdk/cdk ⭐ 453
The Chemistry Development Kit
dependent packages 0 total releases 0 most recent commit over 2 years ago
lindenb/jvarkit ⭐ 440
Java utilities for Bioinformatics
dependent packages 0 total releases 0 most recent commit over 2 years ago
intermine/intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 0 total releases 0 most recent commit almost 4 years ago
rdk/p2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
dependent packages 0 total releases 0 most recent commit over 2 years ago
smirarab/ASTRAL ⭐ 193
Accurate Species TRee ALgorithm
dependent packages 0 total releases 0 most recent commit almost 3 years ago
sanger-pathogens/Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
dependent packages 0 total releases 0 most recent commit about 3 years ago
pegasus-isi/pegasus ⭐ 168
Pegasus Workflow Management System - Automate, recover, and debug scientific computations.
dependent packages 0 total releases 0 most recent commit over 2 years ago
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