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The Top 23 Bioinformatics Genome Assembly Open Source Projects

Open source projects categorized as Bioinformatics Genome Assembly
Categories > Data Processing > Bioinformatics
Categories > Genome Assembly
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 9 months ago
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Redundans ⭐ 121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
most recent commit 4 months ago
Mccortex ⭐ 86
De novo genome assembly and multisample variant calling
most recent commit 5 years ago
Pangraph ⭐ 72
A bioinformatic toolkit to align genome assemblies into pangenome graphs
most recent commit 3 months ago
Ggcat ⭐ 60
Compacted and colored de Bruijn graph construction and querying
most recent commit 3 months ago
Tigmint ⭐ 53
⛓ Correct misassemblies using linked AND long reads
total releases 1most recent commit 7 months ago
Dentist ⭐ 44
Close assembly gaps using long-reads at high accuracy.
total releases 13most recent commit 10 months ago
Craq ⭐ 41
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
most recent commit 4 months ago
Haslr ⭐ 39
A fast tool for hybrid genome assembly of long and short reads
most recent commit 4 years ago
Nam Genomes ⭐ 34
Detailed bioinformatics scripts and methods used in the NAM genome paper.
most recent commit 2 years ago
Genomegraphs.jl ⭐ 29
A modern genomics framework for julia
most recent commit 4 years ago
Goldrush ⭐ 26
Linear-time de novo Long Read Assembler
most recent commit 6 months ago
Teloclip ⭐ 26
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
total releases 3most recent commit 3 months ago
Blend ⭐ 26
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
most recent commit a year ago
Metagenomescope ⭐ 22
Visualization tool for (meta)genome assembly graphs
most recent commit a year ago
Score Assemblies ⭐ 20
Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s)
most recent commit 3 months ago
Physlr ⭐ 17
⛓️ Construct a Physical Map from Linked Reads
most recent commit a year ago
Bioinformatics Tools ⭐ 14
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
most recent commit a year ago
Referee ⭐ 13
Reference genome quality scores
most recent commit 3 years ago
Berokka ⭐ 12
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
most recent commit 5 years ago
Angelfish Genome Assembly ⭐ 12
This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.
most recent commit 2 years ago
Genomicscourse ⭐ 11
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
most recent commit 7 months ago
The 4 Latest Releases In Bioinformatics Genome Assembly Open Source Projects
Teloclip ⭐ 26
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
total releases 3latest release November 06, 2023most recent commit 3 months ago
Dentist ⭐ 44
Close assembly gaps using long-reads at high accuracy.
total releases 13latest release September 14, 2022most recent commit 10 months ago
Pyfastg ⭐ 5
A minimal Python library for parsing SPAdes FASTG files
total releases 2latest release June 27, 2022most recent commit 7 months ago
Tigmint ⭐ 53
⛓ Correct misassemblies using linked AND long reads
total releases 1latest release August 30, 2018most recent commit 7 months ago
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