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The Top 23 Docker Bioinformatics Open Source Projects

Open source projects categorized as Docker Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Virtualization > Docker
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Containers ⭐ 621
Bioinformatics containers
most recent commit 3 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18most recent commit 5 months agopypi redun} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Hicexplorer ⭐ 197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
most recent commit 5 months ago
Docker Builds ⭐ 158
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
most recent commit 3 months ago
Hts Nim ⭐ 151
nim wrapper for htslib for parsing genomics data files
most recent commit 8 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Run_dbcan ⭐ 109
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
total releases 17most recent commit 3 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59most recent commit 8 months ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18most recent commit 2 years agonuget BioFSharp} Downloads
Plant Seg ⭐ 81
A tool for cell instance aware segmentation in densely packed 3D volumetric images
most recent commit 3 months ago
Oswitch ⭐ 75
Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
total releases 8most recent commit 7 years ago
Butler ⭐ 68
Butler is a framework for running scientific workflows on public and academic clouds.
most recent commit 4 years ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Havengrc ⭐ 68
☁️Haven GRC - easier governance, risk, and compliance 👨‍⚕️👮‍♀️🦸‍♀️🕵️‍♀️👩‍🔬
total releases 3most recent commit 3 years ago
Uta ⭐ 59
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
most recent commit 3 months ago
Mulled ⭐ 49
Mulled - Automatized Containerized Software Repository
most recent commit 7 years ago
Specs ⭐ 47
BioContainers specifications
most recent commit a year ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
The 5 Most Depended On Docker Bioinformatics Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
The 10 Latest Releases In Docker Bioinformatics Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Redun ⭐ 464
Yet another redundant workflow engine
dependent packages 1total releases 18latest release November 12, 2023most recent commit 5 months agopypi redun} Downloads
Genomehubs ⭐ 12
Search and explore genomic metadata, Earth BioGenome Project progress and assembly features
total releases 128latest release November 09, 2023most recent commit 4 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59latest release August 25, 2023most recent commit 8 months ago
Dentist ⭐ 44
Close assembly gaps using long-reads at high accuracy.
total releases 13latest release September 14, 2022most recent commit 10 months ago
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
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