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The Top 21 Bioinformatics Covid 19 Open Source Projects

Open source projects categorized as Bioinformatics Covid 19
Categories > Data Processing > Bioinformatics
Categories > Covid 19
Deeppurpose ⭐ 826
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
total releases 13most recent commit 6 months ago
Serratus ⭐ 219
Ultra-deep search for novel viruses
most recent commit a year ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Covid19 Event Risk Planner ⭐ 45
COVID19 risk planner R-Shiny application
most recent commit 2 years ago
Covid19kg ⭐ 27
COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology
most recent commit 3 years ago
Pathogentrack ⭐ 22
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
most recent commit 7 months ago
Covigator Ngs Pipeline ⭐ 15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
most recent commit 5 months ago
Sc2 Illumina Pipeline ⭐ 14
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
most recent commit 3 years ago
Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
most recent commit a year ago
Drug Sniffer ⭐ 13
Sniffing out new drugs
most recent commit a year ago
Srijan Gsoc 2020 ⭐ 12
Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers
most recent commit 4 years ago
Covigator ⭐ 11
CoVigator - Monitoring SARS-CoV-2 mutations
most recent commit 3 months ago
Bear ⭐ 7
BEAR: viral diagnostic analysis pipeline for SARS-CoV-2
most recent commit a year ago
Covid 2019 ⭐ 7
Analysis of Coronavirus outbreak data with Pharo
most recent commit 8 months ago
Cowwid ⭐ 7
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
most recent commit 8 months ago
Mrna_vaccine_badge ⭐ 7
A small badge showing a schematic of an mRNA vaccine nanoparticle and blinking the RNA sequence of the Moderna or Pfizer vaccines.
most recent commit 3 years ago
Covseq ⭐ 6
CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
most recent commit 4 years ago
Covid Bioinformatics ⭐ 5
Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs
most recent commit a year ago
Covid Mvp ⭐ 5
COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants of Concern and Interest in near-real time. COVID-MVP is developed in collaboration with nf-ncov-voc https://github.com/cidgoh/nf-ncov-voc as back-end genomics workflow.
most recent commit 6 months ago
Nf Ncov Voc ⭐ 5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
most recent commit 4 months ago
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