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The Top 23 Bioinformatics Tool Open Source Projects

Open source projects categorized as Bioinformatics Tool
Categories > Bioinformatics Tool
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 4 months ago
Trimal ⭐ 139
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
most recent commit 4 months ago
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43most recent commit 5 months ago
Abricate ⭐ 109
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
total releases 1most recent commit 4 years ago
Youtube Tutorials ⭐ 100
📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
most recent commit 4 months ago
Open Cravat ⭐ 98
A modular annotation tool for genomic variants
most recent commit 7 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 5 months ago
Rna Bloom ⭐ 66
🌺 reference-free transcriptome assembly for short and long reads
most recent commit 9 months ago
Clincnv ⭐ 65
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
most recent commit 6 months ago
Snakecharm ⭐ 58
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
most recent commit 6 months ago
Ilearnplus ⭐ 57
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
total releases 4most recent commit 2 years ago
Mnnpy ⭐ 54
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
dependent packages 2total releases 14most recent commit a year agopypi mnnpy} Downloads
Tigmint ⭐ 53
⛓ Correct misassemblies using linked AND long reads
total releases 1most recent commit 8 months ago
Geneview ⭐ 51
Genomics data visualization in Python by using matplotlib.
dependent packages 1total releases 26most recent commit 5 months agopypi geneview} Downloads
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
Htstream ⭐ 48
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
most recent commit a year ago
Bioblender21 ⭐ 47
Blender plugin to process biological data and molecular work.
most recent commit 2 years ago
Scissor ⭐ 45
Scissor package
most recent commit 2 years ago
Fluentdna ⭐ 43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
total releases 3most recent commit 3 years ago
Webservice Clients ⭐ 43
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
most recent commit a year ago
Phigaro ⭐ 43
Phigaro is a scalable command-line tool for predicting phages and prophages
total releases 37most recent commit 4 months ago
Covtobed ⭐ 36
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
most recent commit 2 years ago
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10most recent commit 7 months ago
The 3 Most Depended On Bioinformatics Tool Open Source Projects
Mnnpy ⭐ 54
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
dependent packages 2total releases 14latest release February 25, 2019most recent commit a year agopypi mnnpy} Downloads
Nease ⭐ 7
A network-based approach for exon set enrichment
dependent packages 2total releases 13latest release April 21, 2022most recent commit 2 years agopypi nease} Downloads
Geneview ⭐ 51
Genomics data visualization in Python by using matplotlib.
dependent packages 1total releases 26latest release June 23, 2022most recent commit 5 months agopypi geneview} Downloads
The 10 Latest Releases In Bioinformatics Tool Open Source Projects
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43latest release November 22, 2023most recent commit 5 months ago
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10latest release November 05, 2023most recent commit 7 months ago
Gppy ⭐ 7
[G]enomic [P]ositioning with [Py]thon
total releases 3latest release October 19, 2023most recent commit 7 months ago
Codonu ⭐ 13
A python project for analysis of codon usage for gene or genome analysis
total releases 8latest release October 01, 2023most recent commit 7 months ago
Cloops2 ⭐ 32
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
total releases 6latest release July 20, 2023most recent commit 7 months ago
Fastax ⭐ 12
Make phylogenetic trees and lineages from the NCBI Taxonomy database
total releases 7latest release March 19, 2023most recent commit a year ago
Ciara_python ⭐ 6
Implementation of entropy of mixing algorithm in python
total releases 8latest release October 19, 2022most recent commit 2 years ago
Wlabkit ⭐ 7
🧬 This is a toolkit to handle bio-data from WeiBin Lab
total releases 21latest release July 08, 2022most recent commit 5 months ago
Geneview ⭐ 51
Genomics data visualization in Python by using matplotlib.
dependent packages 1total releases 26latest release June 23, 2022most recent commit 5 months agopypi geneview} Downloads
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