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The Top 23 Bioconductor Package Open Source Projects

Open source projects categorized as Bioconductor Package
Categories > Bioconductor Package
Sc3 ⭐ 115
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
most recent commit 3 years ago
Purecn ⭐ 114
Copy number calling and variant classification using targeted short read sequencing
most recent commit 4 months ago
Curatedmetagenomicdata ⭐ 109
Curated Metagenomic Data of the Human Microbiome
most recent commit 7 months ago
Dorothea ⭐ 105
R package to access DoRothEA's regulons
most recent commit a year ago
Basics ⭐ 81
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
most recent commit 5 months ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 4 months ago
Rforproteomics ⭐ 69
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
most recent commit a year ago
Scmap ⭐ 68
A tool for unsupervised projection of single cell RNA-seq data
most recent commit 3 years ago
Multiassayexperiment ⭐ 67
Bioconductor package for management of multi-assay data
most recent commit 4 months ago
Biocparallel ⭐ 61
Bioconductor facilities for parallel evaluation
most recent commit 7 months ago
Mungesumstats ⭐ 59
Rapid standardisation and quality control of GWAS or QTL summary statistics
most recent commit 4 months ago
Singlecellexperiment ⭐ 52
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/ for the official development version.
most recent commit a year ago
Googlegenomics ⭐ 44
An R package for Google Genomics API queries.
most recent commit a year ago
Curatedtcgadata ⭐ 38
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
most recent commit 5 months ago
Ensembldb ⭐ 33
This is the ensembldb development repository.
most recent commit 6 months ago
Systempipeshiny ⭐ 32
A Shiny framework for workflow management and data visualization
most recent commit 7 months ago
Orthogene ⭐ 31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️
most recent commit 5 months ago
Cbioportaldata ⭐ 29
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
most recent commit 4 months ago
Lefser ⭐ 27
R implementation of the LEfSe method
most recent commit 6 months ago
Rsamtools ⭐ 25
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
most recent commit 4 months ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 5 months ago
Packagerank ⭐ 24
R Package for Computing and Visualizing CRAN and Bioconductor Downloads
most recent commit 4 months ago
Tcgautils ⭐ 20
Toolbox package for organizing and working with TCGA data
most recent commit 4 months ago
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