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The Top 23 Analysis Pipeline Open Source Projects

Open source projects categorized as Analysis Pipeline
Categories > Code Quality > Analysis
Categories > Data Processing > Pipeline
Toggle ⭐ 18
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
most recent commit 2 years ago
Makefile Example ⭐ 18
An example of a data analysis pipeline using Make
most recent commit 8 years ago
Chip Seq_notes ⭐ 17
Notes on ChIP-seq and other-seq-related tools
most recent commit 6 months ago
Sincera ⭐ 16
An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis
most recent commit 3 years ago
Rna Seq Qc ⭐ 16
Rna-seq pipeline, From FASTQ to differential expression analysis...
most recent commit 7 years ago
Pynpoint ⭐ 16
Pipeline for processing and analysis of high-contrast imaging data
dependent packages 1total releases 16most recent commit 8 months agopypi pynpoint} Downloads
H3abionet16s ⭐ 15
H3ABioNet 16S rDNA diverstity analysis package
most recent commit 5 years ago
Gradingkneeoa ⭐ 15
Knee Osteoarthritis Analysis with X-ray Images using CNN
most recent commit 2 years ago
Pigx ⭐ 15
Pipelines in genomics
most recent commit 2 years ago
Searchlight2 ⭐ 15
Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
most recent commit a year ago
Parser ⭐ 15
parseR: Pipeline for rna-seq analysis in R
most recent commit 7 years ago
Htapp Pipelines ⭐ 15
A record of the analysis pipelines used to create the HTAPP data
most recent commit 4 months ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 6 months ago
Mangadap ⭐ 15
The MaNGA Data Analysis Pipeline
most recent commit 10 months ago
Gwena ⭐ 15
Gene Co-expression Network analysis pipeline
most recent commit 10 months ago
Scnt Seq ⭐ 14
Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
most recent commit a year ago
Cookiecutter Snakemake Analysis Pipeline ⭐ 14
A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
most recent commit 8 years ago
Samsa ⭐ 14
Programs and documentation for the SAMSA pipeline, version 1.0
most recent commit 4 years ago
Viper ⭐ 14
Simple, expressive pipeline syntax to transform and manipulate data with ease
total releases 3most recent commit 5 months ago
Adolescent Mouse ⭐ 13
Analysis pipeline for the adolescent mouse nervous system project
most recent commit 6 years ago
Nigelab ⭐ 13
Neurophysiological data analyses by engineers, for physiologists.
most recent commit a year ago
Pipeline For Isoseq ⭐ 13
A pipeline for isoseq
most recent commit 6 years ago
Microbiome_notes ⭐ 13
A continually expanding collection of microbiome analysis tools
most recent commit 2 years ago
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