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The Top 18 Alphafold2 Open Source Projects

Open source projects categorized as Alphafold2
Categories > Alphafold2
Openfold ⭐ 2,235
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
total releases 1most recent commit 5 months ago
Fastfold ⭐ 485
Optimizing AlphaFold Training and Inference on GPU Clusters
most recent commit a year ago
Opencomplex ⭐ 130
Trainable PyTorch framework for developing protein, RNA and complex models.
most recent commit 10 months ago
Saprot ⭐ 121
Official implementation of SaProt.
most recent commit 5 months ago
Parallelfold ⭐ 91
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
most recent commit a year ago
Af2complex ⭐ 72
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
most recent commit a year ago
Mmseqs2 App ⭐ 44
MMseqs2 app to run on your workstation or servers
most recent commit 8 months ago
Revisiting Plms ⭐ 31
Exploring Evolution-aware & free protein language models as protein function predictors
most recent commit a year ago
Proteinfold ⭐ 26
Protein 3D structure prediction pipeline
most recent commit 9 months ago
Framedipt ⭐ 24
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
most recent commit 5 months ago
Aws Rosettafold ⭐ 18
Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.
most recent commit 2 years ago
Prost ⭐ 17
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.
most recent commit a year ago
Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
most recent commit a year ago
Alphafold Stepbystep ⭐ 7
Run AlphaFold2 (and multimer) step by step
most recent commit 2 years ago
Guifold ⭐ 6
GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.
most recent commit 5 months ago
Alphacharges ⭐ 6
𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB
most recent commit 8 months ago
Alphacutter ⭐ 6
This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
most recent commit a year ago
Af2 Plddt Contextualized ⭐ 5
AlphaFold 2's confidence scores put into context
most recent commit a year ago
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