Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
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Bayesian Modelling In Python | 2,202 | 6 years ago | Jupyter Notebook | |||||||
A python tutorial on bayesian modeling techniques (PyMC3) | ||||||||||
Bayesian Stats Modelling Tutorial | 601 | a year ago | 14 | mit | Jupyter Notebook | |||||
How to do Bayesian statistical modelling using numpy and PyMC3 | ||||||||||
Sklearn Bayes | 439 | 2 years ago | 20 | mit | Jupyter Notebook | |||||
Python package for Bayesian Machine Learning with scikit-learn API | ||||||||||
Tutorials | 294 | 19 days ago | 1 | HTML | ||||||
Tutorials on phylogenetic and phylogenomic inference | ||||||||||
Bayesmadesimple | 282 | 3 years ago | 3 | Jupyter Notebook | ||||||
Code for a tutorial on Bayesian Statistics by Allen Downey. | ||||||||||
Scipy2014_tutorial | 281 | 4 years ago | 1 | Jupyter Notebook | ||||||
Tutorial: Bayesian Statistical Analysis in Python | ||||||||||
Bayes_computing_course | 208 | 2 years ago | 1 | mit | Jupyter Notebook | |||||
Trieste | 187 | 5 days ago | 25 | January 31, 2023 | 54 | apache-2.0 | Python | |||
A Bayesian optimization toolbox built on TensorFlow | ||||||||||
Mcmc_pydata_london_2019 | 75 | 4 years ago | 2 | mit | Jupyter Notebook | |||||
PyData London 2019 Tutorial on Markov chain Monte Carlo with PyMC3 | ||||||||||
Tutorial | 63 | 3 years ago | 3 | gpl-3.0 | Jupyter Notebook | |||||
Tutorial on Bayesian tests for Machine Learning |
A collection of tutorials on phylogenetic and phylogenomic analyses
Requirements
A list of all installations required for the tutorials
Getting Started
General instructions on the use of these tutorials
Multiple Sequence Alignment
A tutorial on multiple sequence alignment
Substitution Model Selection
A tutorial on the selection of a substitution model for phylogenetic analysis
Maximum-Likelihood Phylogenetic Inference
A tutorial on phylogenetic inference with maximum likelihood
Bayesian Phylogenetic Inference
A tutorial on Bayesian inference of time-calibrated phylogenies
Phylogenetic Divergence-Time Estimation
A tutorial on phylogenetic divergence-time estimation with with fossils
Ortholog Detection
A tutorial on the detection of orthologs in assembled genomes
Maximum-Likelihood Species-Tree Inference
A tutorial on maximum-likelihood species-tree inference based on gene trees
Bayesian Species-Tree Inference
A tutorial on Bayesian inference of time-calibrated species trees
Local Assembly
A tutorial on the assembly of individual marker sequences from short reads
Species-Tree Inference with SNP Data
A tutorial on the inference of species trees from SNP data based on quartets
Divergence-Time Estimation with SNP Data
A tutorial on Bayesian divergence-time estimation with SNP data
Bayesian Analysis of Species Networks
A tutorial on Bayesian phylogenetic analysis of species networks
Analysis of Introgression with SNP Data
A tutorial on the analysis of hybridization and introgression with SNP data
Analysis of Introgression with Chromosome-Length Alignments
A tutorial on the analysis of hybridization and introgression with whole-chromosome alignments