Covid19 Data

COVID-19 workflows and datasets.
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COVID-19 Data Processing Pipelines and datasets

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This repository hosts workflows to process several data sources and cleaned datasets for COVID-19 cases across the world.


Historical (daily) case data

Country metadata

Historical case data for visualizations


Cases on cruise ships were classified as "international". These data were not shown in the visualizations independently but were included in cases within the data for the "World".


WHO dataset is deprecated. See Our World in Data's announcement: Why we stopped relying on data from the World Health Organization


Install pandas and snakemake using conda.

conda install -c bioconda -c conda-forge snakemake pandas numpy

or pip:

pip install pandas snakemake numpy
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