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Search results for python medical image segmentation

medical-image-segmentation x

81 search results found

Paddleseg ⭐ 7,961

Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.

Mmsegmentation ⭐ 6,974

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

Min_max_similarity ⭐ 949

A contrastive learning based semi-supervised segmentation network for medical image segmentation

Medicalzoopytorch ⭐ 896

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Bcdu Net ⭐ 435

BCDU-Net : Medical Image Segmentation

Caranet ⭐ 407

Context Axial Reverse Attention Network for Small Medical Objects Segmentation

Unext Pytorch ⭐ 359

Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022

PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Dc Unet ⭐ 298

We proposed a novel U-Net-based model -- DC-UNet to do medical image segmentation.

Cfpnet Medicine ⭐ 271

CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation

Kiu Net Pytorch ⭐ 245

Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI

Transbts ⭐ 208

This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).

Stu Net ⭐ 167

The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations), up until April 2023.

Mednext ⭐ 161

MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).

Wsl4mis ⭐ 160

Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.

Cbim Medical Image Segmentation ⭐ 148

A PyTorch framework for medical image segmentation

Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"

Resunetplusplus ⭐ 135

Official code for ResUNetplusplus for medical image segmentation (TensorFlow & Pytorch implementation) (IEEE ISM)

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Hyperdensenet ⭐ 106

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

Organsegrstn_pytorch ⭐ 88

PyTorch implementation of OrganSegRSTN - CVPR 2018

Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation (ACMMM 2021)

Code for CVPR 2021 paper. "Learning Calibrated Medical Image Segmentation via Multi-rater Agreement Modeling".

Data Science Bowl 2018 ⭐ 74

DATA-SCIENCE-BOWL-2018 Find the nuclei in divergent images to advance medical discovery

Unofficial code base for UNETR: Transformers for 3D Medical Image Segmentation

[MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

Unsuprevised_seg_via_cnn ⭐ 55

An unsupervised (or self-supervised) loss function for binary image segmentation.

Open_brats2020 ⭐ 51

Top 10 brats 2020 Solution

[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network

Elastic Boundary Projection ⭐ 45

Implementation of EBP - CVPR 2019

Medicalseg ⭐ 45

MedicalSeg is an easy-to-use 3D medical image segmentation toolkit that supports the whole segmentation process. Specially, We provide data preprocessing acceleration, high precision model on COVID-19 CT scans dataset and MRISpineSeg spine dataset, and a 3D visualization demo based on itkwidgets.

Colonsegnet ⭐ 41

ColonSegNet: Real-Time Polyp Segmentation (Used in NVIDIA Clara Holoscan App for Polyp Segmentation)

Automatic Segmentation of Vestibular Schwannoma with MONAI (PyTorch)

a metric library for Medical Image Segmentation EVALuation

Positional_cl ⭐ 33

code for paper Positional Contrastive Learning for Volumetric Medical Image Segmentation

Brain Tumor Detection In 3d Mris Using Dcgan ⭐ 31

Using DCGAN for segmenting brain tumors from brain image scans

Unet Lits 2d Pipeline ⭐ 30

Liver Lesion Segmentation with 2D Unets

Hyperdensenet_pytorch ⭐ 29

Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation

Pooya Mohammadi ⭐ 27

This is Pooya Mohammadi, Open Source Enthusiast, AI Developer & Researcher

Brats2018 Tumor Segmentation ⭐ 26

We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.

Kits19.miscnn ⭐ 25

Kidney Tumor Segmentation Challenge 2019: MIScnn - 3D Residual U-Net

Transseg ⭐ 25

Official Code Release for Adapting Pre-trained Vision Transformers from 2D to 3D through Weight Inflation Improves Medical Image Segmentation

Focal Unet ⭐ 24

Focal-Unet https://givkashi.github.io/focal-unet/

Cyclemix ⭐ 23

[CVPR 2022] CycleMix: A Holistic Strategy for Medical Image Segmentation from Scribble Supervision

[ISBI 2023] Official Pytorch implementation of "CMU-Net: A Strong ConvMixer-based Medical Ultrasound Image Segmentation Network"

Ram Dsir ⭐ 22

[ECCV'22] Generalizable Medical Image Segmentation via Random Amplitude Mixup and Domain-Specific Image Restoration

Slex Net ⭐ 22

[IEEE-JBHI'2022] Hematoma Expansion Context Guided Intracranial Hemorrhage Segmentation and Uncertainty Estimation(Pytorch)

[MICCAI 2023] MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets (an official implementation)

NanoNet: Real-time medical Image segmentation architecture (IEEE CBMS)

Co Bionet ⭐ 17

[Nature Machine Intelligence Journal] Official pytorch implementation for Uncertainty-Guided Dual-Views for Semi-Supervised Volumetric Medical Image Segmentation

CUTS: A Framework for Multigranular Unsupervised Medical Image Segmentation

Isegformer ⭐ 17

iSegFormer: Interactive Image/Volume Segmentation using Vision Transformers

TGANet: Text-guided attention for improved polyp segmentation [Accepted at MICCAI 2022]

[IJCAI 2023] Co-training with High-Confidence Pseudo Labels for Semi-supervised Medical Image Segmentation

Mha Unet ⭐ 16

The official code for "Only Positive Cases: 5-fold High-order Attention Interaction Model for Skin Segmentation Derived Classification".

Fetalcpseg ⭐ 14

A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI

Alternate Diverse Teaching for Semi-supervised Medical Image Segmentation

Multi Level Global Context Cross Consistency ⭐ 14

Official Pytorch Code base for "Multi-Level Global Context Cross Consistency Model for Semi-Supervised Ultrasound Image Segmentation with Diffusion Model"

Efficientunetplusplus ⭐ 12

Decoder architecture based on the UNet++. Combining residual bottlenecks with depthwise convolutions and attention mechanisms, it outperforms the UNet++ in a coronary artery segmentation task, while being significantly more computationally efficient.

Mvmm Demo ⭐ 12

PyTorch implementation for multivariate mixture model on cardiac segmentation from multi-source images

Histoseg ⭐ 11

HistoSeg is an Encoder-Decoder DCNN which utilizes the novel Quick Attention Modules and Multi Loss function to generate segmentation masks from histopathological images with greater accuracy. This repo contains the code to Test and Train the HistoSeg

Bowelnet ⭐ 11

[TMI 2022] BowelNet: Joint Semantic-Geometric Ensemble Learning for Bowel Segmentation from Both Partially and Fully Labeled CT Images

Dw Hieraseg ⭐ 10

[MedIA'21] Dynamic-weighting Hierarchical Segmentation Network for Medical Images

Capsnetslaseg ⭐ 9

Capsule Networks and Convolutional Neural Networks for the Automated Segmentation of Left Atrium in Cardiac MRI

Transnuseg ⭐ 9

MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation

Duo Segnet ⭐ 9

[MICCAI2021] This is an official PyTorch implementation for "Duo-SegNet: Adversarial Dual-Views for Semi-Supervised Medical Image Segmentation"

Segresearchtoolkit ⭐ 8

A High-Efficient Research Development Toolkit for Image Segmentation Based on Pytorch.

[MICCAI 2022] ShapePU: A New PU Learning Framework Regularized by Global Consistency for Scribble Supervised Cardiac Segmentation

[IEEE-JBHI'2023] M2FTrans: Modality-Masked Fusion Transformer for Incomplete Multi-Modality Brain Tumor Segmentation

Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".

Transnetr ⭐ 7

Official implementation of TransNetR: Transformer-based Residual Network for Polyp Segmentation with Multi-Center Out-of-Distribution Testing (MIDL 2022)

Medicalseg ⭐ 7

3D Medical Image Segmentation Models，集成各种医学图像分割模型的小框架，主要是3D，持续更新...

Unetbiomedicaldiagnosis ⭐ 6

Contains a module for functions that build and evaluate a U-Net Model which is a modified auto-encoder image-to-image architecture that includes skip connections from encoder to decoder layers with matching input dimensions to retain features from the encoded image. The model is designed for image segmentation and produces a mask based off x-ray data. The model is used with lung x-rays to segment out lungs, brain scans to segment out brain tumors, and pictures of a room to segment out a human fi

Pranet Polyps Segmentation ⭐ 5

Implementation of research paper : "PraNet: Parallel Reverse Attention Network for Polyp Segmentation" in Tensorflow

Code for [MLMI 2019] [KiPA22 Challenge] [AMOS 2022 Challenge] Boundary-Aware Network for Medical Image Segmentation.

White matter hyperintensities are signal abnormalities in the white matter that appear as bright areas on T2-weighted MRI sequences. These abnormalities are commonly observed in the brains of elderly individuals. BIANSA is an algorithm that offers a novel approach to automatically segment the abnormal lesions of white matter hyperintensities.

On The Fly Adaptation ⭐ 5

Code base for "On-the-Fly Test-time Adaptation for Medical Image Segmentation"

Automatic segment and generate masks for any 3D medical images using SAM model without prompt

Indvertseg_verse ⭐ 5

Iterative Vertebrae Segmentation - VerSe dataset

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