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Search results for python electron microscopy
electron-microscopy
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python
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23 search results found
Atomai
⭐
164
Deep and Machine Learning for Microscopy
Elektronn3
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161
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Scikit Ued
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120
Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
Cloud Volume
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120
Read and write Neuroglancer datasets programmatically.
Axondeepseg
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110
Axon/Myelin segmentation using Deep Learning
Libertem
⭐
104
Open pixelated STEM framework
Instamatic
⭐
48
Python program for automated electron diffraction data collection
Sofima
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40
Scalable Optical Flow-based Image Montaging and Alignment
Rosettasciio
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37
Python library for reading and writing scientific data format
Artiax
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16
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
Stemtool
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15
A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality
Starparser
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12
Manipulate and mine Relion .star files
Particlespy
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12
Package for analysing particles in electron microscopy data sets.
Please
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11
PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.
Empanada Napari
⭐
8
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
Stemia
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8
Scripts and Tools for Electron Microscopy Image Analysis.
Feabas
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8
Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
Simplipytem
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7
Package to make analysis of transmission electron microscopy images simple.
Pyserialem
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7
Python module to read/write SerialEM navigator files.
Pymontecarlo
⭐
7
Python interface for Monte Carlo simulation programs
Elektronn2
⭐
7
A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks, based on Theano
Libertem Blobfinder
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5
LiberTEM correlation and refinement library
Temul
⭐
5
Functions for analysis of high resolution electron microscopy and spectroscopy data.
Ctfsimulation
⭐
5
A CTF Simulation Web App
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