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Search results for python dicom
dicom
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python
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168 search results found
Pydicom
⭐
1,805
Read, modify and write DICOM files with python code
Imageio
⭐
1,348
Python library for reading and writing image data
Ctk
⭐
755
A set of common support code for medical imaging, surgical navigation, and related purposes.
Nibabel
⭐
598
Python package to access a cacophony of neuro-imaging file formats
Invesalius3
⭐
553
3D medical imaging reconstruction software
Medpy
⭐
523
Medical image processing in Python
Pynetdicom
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473
A Python implementation of the DICOM networking protocol
Gdcm
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322
Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
Dicom2nifti
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300
Gdl
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251
GDL - GNU Data Language
Dicompyler
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224
Extensible radiation therapy research platform and viewer for DICOM and DICOM RT
Heudiconv
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213
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
Dicom2stl
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167
Python script to extract a STL surface from a DICOM image series.
Oct Converter
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167
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
Mricrogl
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159
v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
Highdicom
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154
High-level DICOM abstractions for the Python programming language
Med2image
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139
Converts medical images to more displayable formats, e.g. NIfTI to jpg.
Rt Utils
⭐
135
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
Kaapana
⭐
135
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
Dicompyler Core
⭐
134
A library of core radiation therapy modules for DICOM RT used by dicompyler
Pylinac
⭐
133
A TG-142 toolkit for doing routine linear accelerator quality assurance
Dicom Ecg Plot
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131
Dicom ECG Viewer and Converter. Convert to PDF, PNG, JPG, SVG, ...
Deid
⭐
123
best effort anonymization for medical images using python
Neurdicom
⭐
112
RESTful PACS server with plugins
Bidscoin
⭐
110
BIDScoin converts your source-level neuroimaging data to BIDS
Mritopng
⭐
101
A simple python module to make it easy to batch convert DICOM files to PNG images.
Dicomweb Client
⭐
98
Python client for DICOMweb RESTful services
Slicerheart
⭐
89
3D Slicer extension for cardiac analysis
Monai Deploy
⭐
87
MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Dcmrtstruct2nii
⭐
76
DICOM RT-Struct to mask
Dcmstack
⭐
74
DICOM to Nifti conversion with meta data preservation
Monai Deploy App Sdk
⭐
74
MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.
Odil
⭐
73
Odil is a C++11 library for the DICOM standard
Niffler
⭐
72
Niffler: A DICOM Framework for Machine Learning and Processing Pipelines.
Dicom Anonymizer
⭐
71
Tool to anonymize DICOM files according to the DICOM standard
Dicom_rt_and_images_to_mask
⭐
70
Various utilities created to help with the interpretation of DICOM images and DICOM RT Structures to NumPy masks and Simple-ITK handles/Nifti images. Some necessary steps for deep learning
Examples
⭐
70
EnvoyAI - Instructions and examples for making your algorithm part of our marketplace
Sliderunner
⭐
67
SlideRunner is a tool for massive cell annotations in whole slide images
Machinelearningformedicalimages
⭐
66
Example code on how to apply machine learning methods to medical images. Contains code (python and python notebooks) and data (DICOM)
Siim Acr Pneumothorax Segmentation 5th
⭐
66
https://www.kaggle.com/c/siim-acr-pneumothorax-seg
Dvh Analytics
⭐
65
A DICOM Database Application for Radiation Oncology
Dicomsort
⭐
58
A project to provide custom sorting and renaming of dicom files
Cnn Dicom Segmentation
⭐
57
DICOM Image Segmentation with CNNs in Tensorflow
Bidskit
⭐
57
Utility functions for working with DICOM and BIDS neuroimaging data
Onkodicom
⭐
56
OnkoDICOM was created with Radiation Oncologists to allow Radiation Oncologists to do research on DICOM standard image sets (DICOM-RT, CT, MRI, PET) using open source technologies, such as pydicom, dicompyler-core, PySide6, PIL, and matplotlib. OnkoDICOM is cross platform, open source software, and welcomes contributions. OnkoDICOM was inspired by dicompyler.
Pydicom Seg
⭐
54
Python package for DICOM-SEG medical segmentation file reading and writing
Contrib Pydicom
⭐
51
contributions to the core pydicom base, including tutorials, extra plugins, etc.
Gradient_decode_dicom
⭐
46
🏨Gradient Health DICOM operation for Tensorflow
Dicat
⭐
42
Tool to anonymize DICOM data headers.
Dicomutils
⭐
40
A set of utilities for working with DICOM files
Pylibjpeg
⭐
40
A Python framework for decoding JPEG images, with a focus on supporting pydicom
Pyradise
⭐
37
PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion
Lidc Idri Processing
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37
Scripts for the preprocessing of LIDC-IDRI data
Eidolon
⭐
35
Biomedical Visualization and Analysis Framework
Hackathon Dataset
⭐
33
Working repository to organize assets for the SIIM Stack
Dvh Analytics Bokeh
⭐
30
A DVH Database for Clinicians and Researchers (Deprecated)
Mudicom
⭐
30
A python package that validates, reads, and extracts images from a DICOM file
Ai In Medical Imaging
⭐
30
Gatetools
⭐
27
Python tools and functions for Gate
Oncoserve_public
⭐
27
Sharing Deep Learning Models for Breast Cancer Risk
Dicomifier
⭐
27
A medical image converter
Dicom Cnn
⭐
26
Convolutional neural network solution for deep learning from DICOM images
Pytorch Dicom Classification
⭐
26
A general framework to analyze medical images saved as .dicom files
Dicombrowser
⭐
26
Lightweight portable Dicom browser application
Dicomsort
⭐
25
DICOM sorting utility
Wsidicom
⭐
25
Python package for reading DICOM WSI file sets.
Pydiq
⭐
24
Simple DICOM browser in Python (currently not maintained)
Spinal_detection_baseline
⭐
23
Nodulex_code
⭐
22
Supporting code for the paper "Highly accurate model for prediction of lung nodule malignancy with CT scans".
Dicom_parser
⭐
22
Facilitates DICOM data access.
Med Imagetools
⭐
22
Transparent and reproducible medical image processing pipelines in Python.
Chaos Challenge
⭐
20
Scripts to work with the chaos challenge
Watershed Cuda
⭐
20
An implementation of the watershed algorithm in CUDA.
Opensamd
⭐
20
We help you commercialise your open source medical software.
Dicognito
⭐
20
A library and command line tool for anonymizing DICOM files
Nii2dcm
⭐
20
nii2dcm: NIfTI to DICOM creation with Python
Pyosirix
⭐
19
A python scripting environment for the OsiriX dicom browser
Pyvoxel
⭐
19
Fast Pythonic data structures and tools for wrangling medical images.
Hermes
⭐
19
Hermes DICOM Router (discontinued)
Pdf2dcm
⭐
18
Python Package for PDF to DICOM Conversion
Inference Sdk
⭐
18
SDK for integrating ML models with the Arterys platform
Dvh
⭐
18
A Python script to calculate dose volume histogram (DVH) from DICOM RT Structure data
Beren
⭐
17
A REST client for Orthanc DICOM servers
Abcd Dicom2bids
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17
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
Embedded Pydicom React Viewer
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16
Medical DICOM file P10 Viewer/Chrome Extension + 🐍 Python 🐍 Code In Browser (-Pyodide-> WebAssembly) + Pydicom parser + TypeScript React App (CRA) + Python FastAPI Server Deployment
Healthcare Api Dicomweb Cli
⭐
16
A command line tool for interacting with a DICOMweb server
Pixels
⭐
16
Facilitates simple large scale processing of HLS Medical images, documents, zip files. Previously at https://github.com/dmoore247/pixels
Diana2
⭐
16
DICOM Image Analysis and Archive
Lightdicom_python
⭐
15
Light DICOM package
Clinical_ml_integration
⭐
15
Pylibjpeg Openjpeg
⭐
15
A J2K and JP2 plugin for pylibjpeg
Radiomics Tools
⭐
14
Image processing tools for radiomics analysis
Covid Ct Md
⭐
14
A COVID-19 CT Scan Dataset Applicable in Machine Learning and Deep Learning
Ai 4 Clinical Workflow
⭐
14
Integrating AI to Clinical Workflow
Dicom_3d_reconstruction
⭐
14
Based on VTK and python
Dicom Labeling Tool
⭐
14
Web-based app for labeling DICOM files in Python.
Pylibjpeg Libjpeg
⭐
14
A JPEG, JPEG-LS and JPEG XT plugin for pylibjpeg
Aperturecomplexity
⭐
13
Python 3.x port of the Eclipse ESAPI plug-in script used in the study : Predicting deliverability of volumetric-modulated arc therapy (VMAT) plans using aperture complexity analysis
Dcm
⭐
13
High level DICOM network and file operations. Provides CLI and Python async API.
Texture_analysis
⭐
13
Texture Analysis test tool for PET images
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