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Gen.jl ⭐ 1,758

A general-purpose probabilistic programming system with programmable inference

Bayesian Statistics ⭐ 310

This repository holds slides and code for a full Bayesian statistics graduate course.

Dynamichmc.jl ⭐ 235

Implementation of robust dynamic Hamiltonian Monte Carlo methods (NUTS) in Julia.

Mamba.jl ⭐ 228

Markov chain Monte Carlo (MCMC) for Bayesian analysis in julia

A Bayesian Analysis Toolkit in Julia

Miscellaneous R Code ⭐ 140

Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Now almost entirely superseded by the models-by-example repo.

Forneylab.jl ⭐ 134

Julia package for automatically generating Bayesian inference algorithms through message passing on Forney-style factor graphs.

Diffeqbayes.jl ⭐ 119

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

Bayesian Segmentation of Spatial Transcriptomics Data

Arviz.jl ⭐ 96

Exploratory analysis of Bayesian models with Julia

Bayesianoptimization.jl ⭐ 84

Bayesian optimization for Julia

Advancedvi.jl ⭐ 55

Implementation of variational Bayes inference algorithms

Cmblensing.jl ⭐ 50

The automatically differentiable and GPU-compatible toolkit for CMB analysis.

Gpabc.jl ⭐ 49

Approxbayes.jl ⭐ 44

Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia

Dynamichmcexamples.jl ⭐ 37

Examples for Bayesian inference using DynamicHMC.jl and related packages.

Logdensityproblems.jl ⭐ 34

A common framework for implementing and using log densities for inference.

Cmdstan.jl ⭐ 32

CmdStan.jl v6 provides an alternative, older Julia wrapper to Stan's `cmdstan` executable. CmdStan will be deprecated in 2022.

Museinference.jl ⭐ 28

Fast approximate high-dimensional hierarchical Bayesian inference

Embracinguncertainty ⭐ 24

Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"

Kerneldensityestimate.jl ⭐ 23

Kernel Density Estimate with product approximation using multiscale Gibbs sampling

Bayesiannonparametrics.jl ⭐ 23

BayesianNonparametrics in julia

Mcmcdiagnostics.jl ⭐ 22

Markov Chain Monte Carlo convergence diagnostics in Julia

Simulatedneuralmoments.jl ⭐ 21

package for Bayesian and classical estimation and inference based on statistics that are filtered through a trained neural net

Bayesianoptimization.jl ⭐ 21

A julia package for bayesian optimization of black box functions.

Hawkesprocesses.jl ⭐ 20

MCMC Inference for a Hawkes process in Julia

Bayesiandatafusion.jl ⭐ 20

Bayesian multi-tensor factorization methods, with side information

Posteriorplots.jl ⭐ 20

Graphical tools for Bayesian inference and posterior predictive checks.

Biguq.jl ⭐ 17

Bayesian Information Gap Decision Theory

Bayesianmixtures.jl ⭐ 16

Julia package for Bayesian mixture models

Bayesiansvm ⭐ 16

Source code of the Bayesian SVM described in the paper by Wenzel et al. "Bayesian Nonlinear Support Vector Machines for Big Data"

Pareto smoothed importance sampling

AA120Q Course Materials

Inferenceobjects.jl ⭐ 14

Storage for results of Bayesian inference

Chemicalkinetics.jl ⭐ 13

Simulation, Bayesian inference and Bayesian model selection for chemical kinetics in Julia

Posteriordb.jl ⭐ 12

Utilities for loading posteriordb with Julia

Smartboost.jl ⭐ 12

SMARTboost (boosting of smooth symmetric regression trees)

Julia translation for David Barber's Bayesian Reasoning and Machine Learning MATLAB toolbox

Quantumbayesian.jl ⭐ 11

Julia package for simulating quantum evolution, including quantum Bayesian stochastic readout.

Whale.jl ⭐ 10

Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation

Bayesianquadrature.jl ⭐ 10

Is there anything we can't make Bayesian?

Geometricmcmc.jl ⭐ 9

Geometric MCMC algorithms and zero-variance (ZV) Monte Carlo Bayesian routines

Bayestesting.jl ⭐ 9

Gpseudotime ⭐ 8

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data

Bayesian bi-clustering of categorical data

Bayesiansumproductnetworks ⭐ 8

Implementation of Bayesian Sum-Product Networks

Lowrankdpp.jl ⭐ 7

Julia implementation of low-rank determinantal point process (DPP) learning and prediction algorithms.

MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments

Bayesmodels ⭐ 6

Easy Bayesian models.

Bayesian Inference At Scale

Altdistributions.jl ⭐ 6

Implementations for some distributions using a consistent API and AD-friendly code.

Bitemodel.jl ⭐ 6

Bayesian Ice Thickness Estimation model

Actrtutorials.jl ⭐ 5

A set of tutorials for building likelihood based models in ACT-R

Abcdistances.jl ⭐ 5

Performs approximate Bayesian computation (ABC) using various distance functions

Bayesianrecordlinkage.jl ⭐ 5

Perform Bayesian record linkage with a one-to-one matching assumption.

A Julia package for bayesian probabilistic matrix factorization (BPMF).

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