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Search results for java protein
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protein
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42 search results found
Protein
⭐
597
🥚 An Android App for Dribbble
Interproscan
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259
P2rank
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193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Bio4j
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112
Bio4j abstract model and general entry point to the project
Biojava Tutorial
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111
📖📚An introductory tutorial for BioJava
Msgfplus
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60
MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database.
Ahrd
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58
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
Peptide Shaker
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41
Interpretation of proteomics identification results
Osprey3
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40
Open Source Protein REdesign for You v3
Gc4s
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34
GUI Components for (Java) Swing
Babelomics
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31
Biozernike
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30
Protein structure descriptors and alignment based on 3D Zernike moments.
Atlas
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24
Expression Atlas
Symmetry
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22
🎡 Detect, analyze, and visualize protein symmetry
Psipred
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21
PSIPRED Protein Secondary Structure Predictor
Pia
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20
📚 🔬 PIA - Protein Inference Algorithms
Pride Inspector
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15
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
Pantools
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15
PanTools
Vigor4
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13
VIGOR4
Seqr
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11
Msmexplorer
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11
MSMExplorer is a visualization system for markov state models for protein folding networks
Proxl Web App
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11
ProXL Web App -- Visualize and Share Protein Cross-linking Data
Ecpred
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10
Stringapp
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9
Cytoscape interface to STRING and STITCH
Polyfold
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9
An interactive visual simulator for distance-based protein folding
Reactionflow
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9
ReactionFlow is an application for visualizing biological pathways, emphasizing "causality analysis" tasks.
Eppic
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8
✅❌Evolutionary protein-protein interface classifier
Plaac
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8
Prion-Like Amino Acid Composition
Strucmotif Search
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8
Real-time structure motif searching in protein 3D structures using an inverted index strategy
Moltimate Backend
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7
A protein active site alignment tool
G2s
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7
A standalone component to provide mappings between protein sequence positions and PDB 3D protein structure models
Chexmix
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7
ChExMix: the ChIP-exo mixture model
Fit3d
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7
🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data.
Pathwaymatrix
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6
Irisas
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6
Integrated region-based variants synchronization and Annotation for different inbreeding lines
Juchmme
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6
Java Utility for Class Hidden Markov Models and Extensions
Pathwaymatcher_dev
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6
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/Pathway
Dia Umpire
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5
Computational analysis for mass spectrometry-based proteomics data
Ap11_samifier
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5
Mascot (peptide) search results converted into SAM format
Qs Align
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5
↘️↗️↩️ Scalable protein quaternary structure alignment algorithm
Proteinclusterquant
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5
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
Gosprey
⭐
5
Open Source Protein REdesign for You on a GPU!
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