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Search results for python bioimage analysis

bioimage-analysis x

10 search results found

Stardist ⭐ 962

StarDist - Object Detection with Star-convex Shapes

AI-based pathology predicts origins for cancers of unknown primary - Nature

Plant Seg ⭐ 81

A tool for cell instance aware segmentation in densely packed 3D volumetric images

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

Multitemplatematching Fiji ⭐ 34

Fiji plugin for object(s) detection using template(s) matching

Tool for segmentation in bioimaging

Tysserand ⭐ 22

Fast reconstruction of spatial networks from bioimages.

Magellanmapper ⭐ 18

MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification

computer vision models for single-cell phenotyping

Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image processing pipeline on top of Dask, a distributed computing framework written in Python. SCIP performs projection, illumination correction, image segmentation and masking, and feature extraction.

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