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469 search results found
Ggstatsplot
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1,773
Enhancing {ggplot2} plots with statistical analysis 📊📣
Causalimpact
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1,484
An R package for causal inference in time series
Easystats
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949
🌌 The R easystatsproject
Ggdist
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698
Visualizations of distributions and uncertainty
Tidybayes
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689
Bayesian analysis + tidy data + geoms (R package)
Report
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632
📜 🎉 Automated reporting of objects in R
Bda_r_demos
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530
Bayesian Data Analysis demos for R
Bayestestr
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529
👻 Utilities for analyzing Bayesian models and posterior distributions
Correlation
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390
🔗 Methods for Correlation Analysis
Bayesplot
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376
bayesplot R package for plotting Bayesian models
Rstanarm
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356
rstanarm R package for Bayesian applied regression modeling
Bayesian_first_aid
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292
Inside every classical test there is a Bayesian model trying to get out.
Bayesab
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278
🐢 bayesAB: Fast Bayesian Methods for A/B Testing
Pecan
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183
The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.
Shinystan
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181
shinystan R package and ShinyStan GUI
Mlrmbo
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177
Toolbox for Bayesian Optimization and ModelBased Optimization in R
Posterior
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147
The posterior R package
Miscellaneous R Code
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140
Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Now almost entirely superseded by the modelsbyexample repo.
Loo
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130
loo R package for approximate leaveoneout crossvalidation (LOOCV) and Pareto smoothed importance sampling (PSIS)
Bayesfactor
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124
BayesFactor R package for Bayesian data analysis with common statistical models.
Sigminer
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118
🌲 An easytouse and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/
Celda
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116
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
Cmdstanr
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110
CmdStanR: the R interface to CmdStan
Psycho.r
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110
An R package for experimental psychologists
Ggmcmc
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106
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
Bayesiannetwork
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105
Bayesian Network Modeling and Analysis
Projpred
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104
Projection predictive variable selection
Tidyposterior
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101
Bayesian comparisons of models using resampled statistics
Bayesiantools
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97
GeneralPurpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Parbayesianoptimization
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88
Parallelizable Bayesian Optimization in R
Bglr R
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83
Basics
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81
BASiCS: Bayesian Analysis of SingleCell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
Laplacesdemon
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77
A complete environment for Bayesian inference within R
Blenditbayes
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76
Code used in my blog "Blend it like a Bayesian!"
Rbayesianoptimization
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75
Bayesian Optimization of Hyperparameters
Blavaan
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74
An R package for Bayesian structural equation modeling
Gsoc17 Hhmm
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73
Bayesian Hierarchical Hidden Markov Models applied to financial time series, a research replication project for Google Summer of Code 2017.
Bayescog_wien
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70
Teaching materials for BayesCog at Faculty of Psychology, University of Vienna
Multilevelmod
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67
Parsnip wrappers for mixedlevel and hierarchical models
Dbda2estan
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63
Stan implementations of models in Doing Bayesian Data Analysis, 2nd Edition
Bayesian Basics
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61
🚫 ↩️ A document that introduces Bayesian data analysis.
Bartcause
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60
Causal Inference using Bayesian Additive Regression Trees
Bmr
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59
Bayesian Macroeconometrics in R
Dirichletprocess
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53
Build dirichletprocess objects for data analysis
Pscl
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52
Political Science Computational Laboratory
Bayes Vis Paper
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49
'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
Bactdating
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49
Bayesian inference of ancestral dates on bacterial phylogenetic trees
Statsr
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49
Companion package for the Coursera Statistics with R specialization
Celda
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47
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
Bayesmodels
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46
The Tidymodels Extension for Bayesian Models
Geostan
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46
Bayesian spatial analysis
Bayesboot
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44
An R package implementing Rubin's (1981) Bayesian bootstrap.
Learningbayes
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44
An introduction to Bayesian statistics
Mixsiar
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42
A framework for Bayesian mixing models in R:
Baggr
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41
R package for Bayesian metaanalysis models, using Stan
Quant3materials
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40
PhD course: Quantitative Methods for Political Science III (NYU)  Recitation Materials
Changepoints
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40
Bayesian online change point detection and offline learning
Walker
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40
Bayesian Generalized Linear Models with TimeVarying Coefficients
Glmmfields
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40
R package for Bayesian spatial and spatiotemporal GLMMs with possible extremes
Bmlm
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40
Bayesian multilevel mediation models in R
Biogeobears
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40
BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
Bggm
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40
Bayesian Gaussian Graphical Models
Bayesian
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40
Bindings for Bayesian TidyModels
Stantargets
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39
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
Mlbayesopt
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39
R package to tune parameters for machine learning(Support Vector Machine, Random Forest, and Xgboost), using bayesian optimization with gaussian process
Spatialreg
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39
spatialreg: spatial models estimation and testing
Bvar
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39
Toolkit for the estimation of hierarchical Bayesian vector autoregressions. Implements hierarchical prior selection for conjugate priors in the fashion of Giannone, Lenza & Primiceri (2015). Allows for the computation of impulse responses and forecasts and provides functionality for assessing results.
Varbvs
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39
Largescale Bayesian variable selection for R and MATLAB.
Cbnplot
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38
Bayesian network plot for the enrichment analysis results
Causact
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38
causact: R package to accelerate computational Bayesian inference workflows in R through interactive visualization of models and their output.
Sparsebn
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37
Software for learning sparse Bayesian networks
Priorsense
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37
priorsense: an R package for prior diagnostics and sensitivity
Survhe
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36
Survival analysis in health economic evaluation Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation. survHE can fit a large range of survival models using both a frequentist approach (by calling the R package flexsurv) and a Bayesian perspective.
Shinybn
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36
shinyBN: An online application for interactive Bayesian network inference and visualization
Bssm
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36
Bayesian Inference of State Space Models
Bchron
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33
A Bayesian radiocarbon chronology model with R
Bcea
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32
Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the "reference") to the others ("comparators"). Produces many summary and plots to analyse the results
Fastbaps
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31
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
Ubms
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31
Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.
Bridgesampling
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30
R package for bridge sampling
Bmad
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30
Resources for Bayesian Models for Astrophysical Data  Hilbe, de Souza and Ishida, 2016, Cambridge University Press
Risknetwork
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28
Risk Network Modeling and Analysis
Sigfit
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27
Flexible Bayesian inference of mutational signatures
Phyr
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27
Functions for phylogenetic analyses
Tmbstan
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27
Statistical Rethinking Solutions
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26
Solutions of practice problems from the Richard McElreath's "Statistical Rethinking" book.
Metabma
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26
Bayesian Model Averaging for Random and Fixed Effects MetaAnalysis
Bayeshmm
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26
Full Bayesian Inference for Hidden Markov Models
Sccomp
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26
Robust differential composition and variability analysis for singlecell data
Bayesian Multivariate Time Series Causal Inference
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26
R code for ''Bayesian method for causal inference in spatiallycorrelated multivariate time series''
Bayesian_tutorial
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25
Tutorial on Bayesian phylogenetic analysis
Ldats
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25
Latent Dirichlet Allocation coupled with Bayesian Time Series analyses
Bvartools
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23
Functions for Bayesian inference of vector autoregressive and vector error correction models
Bkmr
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23
Bayesian kernel machine regression
Jointai
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22
Joint Analysis and Imputation of generalized linear models and linear mixed models with missing values
Bayesiansocialscience
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22
사회과학자를 위한 데이터과학 방법론 (코드 저장소)
Simmr
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22
A stable isotope mixing model in R
Covidseir
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22
Bayesian SEIR model to estimate the effects of socialdistancing on COVID19
Bayesian_workshop
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21
Material for a Bayesian statistics workshop
Diff Means Half Dozen Ways
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21
Run standard ttests, simulations, and Bayesian difference in means tests with R and Stan
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