Zumis
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Zumis | 232 | a year ago | 7 | gpl-3.0 | R | |||||
| zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs | ||||||||||
| Mpraflow | 27 | 3 months ago | 11 | apache-2.0 | Python | |||||
| A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data | ||||||||||
| Icshape | 14 | 9 years ago | 3 | Perl | ||||||
| icSHAPE pipeline | ||||||||||
| Proseq2.0 | 14 | 10 months ago | 5 | bsd-2-clause | Shell | |||||
| Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing | ||||||||||
| Miseq 16s Pipeline | 11 | 9 years ago | mit | Python | ||||||
| HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq | ||||||||||
| Baseqdrops | 11 | 5 years ago | Python | |||||||
| A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data. | ||||||||||
| Larry | 10 | 10 months ago | Jupyter Notebook | |||||||
| Dropseqrunner | 10 | 3 years ago | Python | |||||||
| Lightweight pipeline for processing droplet-based single-cell RNA-seq data | ||||||||||
| Arks | 9 | 4 years ago | C++ | |||||||
| 🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads | ||||||||||
| Miseq_bin | 8 | a year ago | 2 | lgpl-3.0 | HTML | |||||
| Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes | ||||||||||
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