Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Rmsd | 438 | 5 | 12 | 3 months ago | 9 | January 06, 2023 | 5 | bsd-2-clause | Python | |
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format | ||||||||||
Freesasa | 95 | 3 months ago | 3 | mit | C | |||||
C-library for calculating Solvent Accessible Surface Areas | ||||||||||
Atomium | 92 | a year ago | 4 | November 29, 2021 | 13 | mit | Python | |||
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production) | ||||||||||
Pdbtools | 68 | 4 years ago | 4 | gpl-3.0 | Python | |||||
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files | ||||||||||
Pdbtbx | 33 | 4 months ago | 29 | September 01, 2023 | 12 | mit | Rust | |||
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust. | ||||||||||
Pmx | 33 | 4 years ago | 6 | lgpl-3.0 | Python | |||||
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling | ||||||||||
Pdb Benchmarks | 26 | 3 years ago | mit | Python | ||||||
Benchmarking common tasks on proteins in various languages and packages | ||||||||||
Onionnet | 24 | 3 years ago | 4 | gpl-3.0 | Python | |||||
A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction | ||||||||||
Pdbcolor | 24 | 7 months ago | Python | |||||||
Python code to color a PDB structure based on parameters from a multiple sequence alignment | ||||||||||
Chem.cr | 22 | 3 months ago | 60 | mit | Crystal | |||||
Library for dealing with computational chemistry files |