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The Top 11 Vcf Variant Calling Open Source Projects

Open source projects categorized as Vcf Variant Calling
Categories > Variant Calling
Categories > Science > Vcf
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Paragraph ⭐ 140
Graph realignment tools for structural variants
most recent commit a year ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Vcfdist ⭐ 48
vcfdist: Accurately benchmarking phased variant calls
most recent commit 3 months ago
Indelope ⭐ 39
find large indels (in the blind spot between GATK/freebayes and SV callers)
most recent commit 6 years ago
Popdel ⭐ 32
Population-wide Deletion Calling
most recent commit a year ago
Cerebra ⭐ 26
A tool for fast and accurate summarizing of variant calling format (VCF) files
total releases 15most recent commit 4 years ago
Germline Dna ⭐ 23
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
most recent commit a year ago
Dv Trio ⭐ 8
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
most recent commit 3 years ago
Sentieon Dnascope Ml ⭐ 7
Sentieon DNAscope + Machine Learning Model
most recent commit 2 years ago
Novocaller ⭐ 6
most recent commit 3 years ago
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