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The Top 19 Visualization Single Cell Open Source Projects

Open source projects categorized as Visualization Single Cell
Categories > Single Cell
Categories > User Interface > Visualization
Isee ⭐ 217
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
most recent commit 19 days ago
Stream ⭐ 163
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
most recent commit 2 years ago
Dittoseq ⭐ 153
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
most recent commit 5 months ago
Sccustomize ⭐ 142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
total releases 5most recent commit 3 months ago
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11most recent commit 3 months ago
Too Many Cells ⭐ 95
Cluster single cells and analyze cell clade relationships with colorful visualizations.
total releases 30most recent commit 5 months ago
Topometry ⭐ 69
Systematically learn and evaluate manifolds from high-dimensional data
total releases 26most recent commit 10 months ago
Mudan ⭐ 66
Multi-sample Unified Discriminant ANalysis
most recent commit a year ago
Cirrocumulus ⭐ 55
Bring your single-cell data to life
total releases 147most recent commit 5 months ago
Seuratv3wizard ⭐ 26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
most recent commit 4 years ago
Asap ⭐ 24
ASAP : Automated Single-cell Analysis Pipeline
most recent commit 4 months ago
Dbmap ⭐ 20
A fast, accurate, and modularized dimensionality reduction approach based on diffusion harmonics and graph layouts. Escalates to millions of samples on a personal laptop. Adds high-dimensional big data intrinsic structure to your clustering and data visualization workflow.
most recent commit 3 years ago
Nasqar ⭐ 10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
most recent commit 4 years ago
Trendcatcher ⭐ 7
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
most recent commit 3 months ago
Dea_seurat ⭐ 6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
most recent commit 4 months ago
Genomap ⭐ 5
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
total releases 24most recent commit 8 months ago
Yeskit ⭐ 5
Yet another single-cell analysis toolkit
most recent commit 6 months ago
Genocraft ⭐ 5
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
most recent commit 5 months ago
Escher ⭐ 5
R package to visualize colocalization for single cell & spatially-resolved genomics data
most recent commit 3 months ago
The 6 Latest Releases In Visualization Single Cell Open Source Projects
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11latest release October 11, 2023most recent commit 3 months ago
Cirrocumulus ⭐ 55
Bring your single-cell data to life
total releases 147latest release September 29, 2023most recent commit 5 months ago
Topometry ⭐ 69
Systematically learn and evaluate manifolds from high-dimensional data
total releases 26latest release November 28, 2022most recent commit 10 months ago
Too Many Cells ⭐ 95
Cluster single cells and analyze cell clade relationships with colorful visualizations.
total releases 30latest release October 06, 2022most recent commit 5 months ago
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