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The Top 20 Shell Vcf Open Source Projects

Open source projects categorized as Shell Vcf
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Sv Plaudit ⭐ 47
Pipeline for structural variant image curation and analysis.
most recent commit 2 years ago
Common_analyses ⭐ 20
Repository of common bioinformatics scripts
most recent commit 3 years ago
Automap ⭐ 19
Tool to find regions of homozygosity (ROHs) from sequencing data.
most recent commit 7 months ago
Rtgeval ⭐ 19
Wrapper for RTG's vcfeval; DEPRECATED!
most recent commit 8 years ago
Ebi_cancer_workshop_visualization ⭐ 18
EBI cancer workshop course materials
most recent commit 2 years ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 5 months ago
Variants2neoantigen ⭐ 14
a neoantigen calling pipeline begins from variants record file (MAF)
most recent commit 5 years ago
Popscle_helper_tools ⭐ 13
Helper tools for popscle
most recent commit a year ago
Gwas_gemma ⭐ 13
Perform GWAS with gemma in a simple pipeline
most recent commit 2 years ago
Cau Tibetanwheatseq ⭐ 10
Customized codes used in Tibetan wheat sequencing project.
most recent commit 2 years ago
Dv Trio ⭐ 8
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
most recent commit 3 years ago
Mb Gatk Sge ⭐ 8
SGE scripts / pipeline for running GATK/VEP on a cluster
most recent commit 3 years ago
Sentieon Dnascope Ml ⭐ 7
Sentieon DNAscope + Machine Learning Model
most recent commit 2 years ago
Wes.wgs ⭐ 7
Covid-19 HGI WES/WGS burden test BQC-19 pipeline
most recent commit 2 years ago
Guide To Manipulating Plink Eig And Vcf Files ⭐ 6
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
most recent commit 8 months ago
Exonchipprocessing ⭐ 5
most recent commit 10 years ago
Tronflow Vcf Postprocessing ⭐ 5
A Nextflow variant normalization pipeline based on vt and bcftools
most recent commit a year ago
Variantqc ⭐ 5
Variant quality checking scripts.
most recent commit 8 years ago
Vcf Liftover ⭐ 5
Liftover VCF files
most recent commit 7 years ago
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