Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Rna Seq Analysis Open Source Projects

Open source projects categorized as Rna Seq Analysis
Categories > Rna Seq Analysis
Scarches ⭐ 294
Reference mapping for single-cell genomics
dependent packages 2total releases 28most recent commit 3 months agopypi scArches} Downloads
Bambu ⭐ 150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
most recent commit 4 months ago
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43most recent commit 4 months ago
Omicsplayground ⭐ 112
Visual self-service analytics platform for big omics data.
most recent commit 3 months ago
Interactive 3d Plotting In Seurat 3.0.0 ⭐ 88
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
most recent commit a year ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 3 months ago
Zika Rnaseq Pipeline ⭐ 73
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
most recent commit 5 years ago
Rail ⭐ 70
Scalable RNA-seq analysis
most recent commit 3 years ago
Single_cell_portal_core ⭐ 60
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
most recent commit 3 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Pcaexplorer ⭐ 51
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
most recent commit 6 months ago
Sports1.1 ⭐ 42
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
most recent commit 8 months ago
Single_cell_portal ⭐ 41
Tutorials, workflows, and convenience scripts for Single Cell Portal
total releases 5most recent commit 2 years ago
Clustering_on_transcript_compatibility_counts ⭐ 40
Clustering cells from single cell RNA seq assays
most recent commit 5 years ago
Sprint ⭐ 40
SNP-free RNA editing Identification Toolkit
most recent commit 4 months ago
Rop ⭐ 35
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
most recent commit a year ago
Pipeline Nanopore Ref Isoforms ⭐ 35
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
most recent commit 2 years ago
Pmartr ⭐ 34
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
most recent commit 3 months ago
Grein ⭐ 30
GREIN : GEO RNA-seq Experiments Interactive Navigator
most recent commit 5 years ago
Netbid ⭐ 28
Data-driven Network-based Bayesian Inference of Drivers
most recent commit a year ago
Ideal ⭐ 28
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
most recent commit 6 months ago
Imoka ⭐ 22
interactive Multi Objective K-mer Analysis
most recent commit a year ago
Scgeatoolbox ⭐ 21
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
most recent commit 3 months ago
The 5 Latest Releases In Rna Seq Analysis Open Source Projects
Scarches ⭐ 294
Reference mapping for single-cell genomics
dependent packages 2total releases 28latest release December 08, 2023most recent commit 3 months agopypi scArches} Downloads
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43latest release November 22, 2023most recent commit 4 months ago
Ciara_python ⭐ 6
Implementation of entropy of mixing algorithm in python
total releases 8latest release October 19, 2022most recent commit 2 years ago
Single_cell_portal ⭐ 41
Tutorials, workflows, and convenience scripts for Single Cell Portal
total releases 5latest release November 02, 2020most recent commit 2 years ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.