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The Top 23 R Transcriptomics Open Source Projects

Open source projects categorized as R Transcriptomics
Categories > Transcriptomics
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5most recent commit a year ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Tidybulk ⭐ 153
Brings bulk and pseudobulk transcriptomics to the tidyverse
most recent commit 4 months ago
Bambu ⭐ 150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
most recent commit 4 months ago
Pando ⭐ 88
Multiome GRN inference.
most recent commit 3 months ago
Scrattch.hicat ⭐ 86
Hierarchical, iterative clustering for analysis of transcriptomics data in R
most recent commit 6 months ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 3 months ago
Singlecellhaystack ⭐ 68
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
most recent commit 3 months ago
Tomicsvis ⭐ 50
Transcriptomics Visualization R package.
total releases 1most recent commit 3 months ago
Voyager ⭐ 49
From geospatial to spatial -omics
most recent commit 4 months ago
Cosmosr ⭐ 46
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
most recent commit 5 months ago
Ewce ⭐ 46
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
most recent commit 5 months ago
Celltalker ⭐ 41
Inference of cell-cell communication from single-cell RNAseq data
most recent commit 10 months ago
Scpa ⭐ 33
R package for pathway analysis in scRNA-seq data
most recent commit 6 months ago
Bioc_2020_tidytranscriptomics ⭐ 18
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
most recent commit 4 years ago
Imsig ⭐ 17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
total releases 3most recent commit 3 years ago
Scrattch.vis ⭐ 17
scRNA-seq data visualization from scrattch
most recent commit 2 years ago
Gwena ⭐ 15
Gene Co-expression Network analysis pipeline
most recent commit 10 months ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6most recent commit 2 years ago
Omics ⭐ 14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
most recent commit 4 months ago
Compbio Gists ⭐ 12
Computational Biology & Bioinformatics Resources
most recent commit a year ago
Scrattch ⭐ 12
Single cell RNA-seq analysis for transcriptomic type characterization
most recent commit 3 years ago
The 5 Latest Releases In R Transcriptomics Open Source Projects
Tomicsvis ⭐ 50
Transcriptomics Visualization R package.
total releases 1latest release July 06, 2023most recent commit 3 months ago
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5latest release April 23, 2023most recent commit a year ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6latest release October 08, 2022most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2latest release March 30, 2021most recent commit 2 years ago
Imsig ⭐ 17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
total releases 3latest release January 10, 2021most recent commit 3 years ago
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